PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s808301g001
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family ERF
Protein Properties Length: 245aa    MW: 25873.4 Da    PI: 5.6529
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s808301g001genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.31.9e-18115165256
                AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                         y+GVr +  +g+Wv+eIr+p++   + r++lg+f tae+Aa+a++ a++ ++g+
  PDK_30s808301g001 115 TYRGVRMRN-WGKWVSEIREPRK---KSRIWLGTFPTAEMAARAHDVAALTIKGH 165
                        69****998.**********843...6***********************99886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.1E-12115165IPR001471AP2/ERF domain
SuperFamilySSF541712.03E-18115165IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.5E-27115165IPR001471AP2/ERF domain
PROSITE profilePS5103220.798115173IPR001471AP2/ERF domain
SMARTSM003801.8E-27115178IPR001471AP2/ERF domain
PRINTSPR003678.8E-11116127IPR001471AP2/ERF domain
CDDcd000181.70E-26116168No hitNo description
PRINTSPR003678.8E-11138154IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 245 aa     Download sequence    Send to blast
MEEPLTHECG EGNTSPSSSC TPTTSSSSSS SSFSSSNSAS STAITTTATT TTTSSCPNAS  60
STAITTTATT TTTTSSCPNA SPELGQGAKI LMEATHSGSK RGEAKKRSKD GKHPTYRGVR  120
MRNWGKWVSE IREPRKKSRI WLGTFPTAEM AARAHDVAAL TIKGHPGSCG SVESAACRDE  180
ITTTSDSPPP ATPSSGNDDA LFDLPDLLLD LRDGFCYSST WLPPAPEEDS TIGFRLEEPF  240
LWGYC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A5e-141121651165Ethylene-responsive transcription factor ERF096
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008803818.35e-99ethylene-responsive transcription factor ERF034-like
TrEMBLA0A2H3YUS21e-97A0A2H3YUS2_PHODC; ethylene-responsive transcription factor ERF034-like
STRINGXP_008803818.12e-98(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP15935354
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11590.13e-32ERF family protein