PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s808371g001
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family B3
Protein Properties Length: 635aa    MW: 70412.4 Da    PI: 8.663
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s808371g001genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B348.22e-15337422183
                        EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEE CS
                 B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFk 83 
                        f+k l+ sd+++ grlvlpkk+ae++   ++++e+  l+++d sg++W +++++  +++s++yvl+ G     ++ +L++gD+ +F 
  PDK_30s808371g001 337 FEKMLSASDAGRIGRLVLPKKCAEAYfpTISQPEGLPLKVQDASGKEWVFQFRFwpNNNSRMYVLE-GVTPCIQSMQLQAGDTGMFF 422
                        89**************************555567778***************9989999999***9.***************98885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.106.9E-25331422IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.12E-16334424IPR015300DNA-binding pseudobarrel domain
CDDcd100172.47E-18335430No hitNo description
PfamPF023622.0E-12337422IPR003340B3 DNA binding domain
SMARTSM010191.3E-13337436IPR003340B3 DNA binding domain
PROSITE profilePS508639.319337439IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 635 aa     Download sequence    Send to blast
MASSSSTSSS AAPKICFNSH CKEPKSEGPR RKAWRLRSGE FADLCDRCSC AYEKGSFCET  60
FHSDSAGWRN CETCGKRVHC GCIVSASAYV LLDAGGIECF ACARKSVVMR MMMLKRPNNT  120
ERMISGGRSS ITAQEKKFED LPEKIGSSSL NHVARDRFAN GNSGPDPVSA FSTYQREEGN  180
ADGLQDPGHL VRDNDPMSTR KGGILDPCST SSVDSLPSST LKEDPSSLLI GLAAPFPPPN  240
GAKDLSRVST TQPQRQMAPQ SSKQFYPHNG IDGELQAQMR NGRPRVDARA RTQLLPRYWP  300
RITDQELQQI SGEYPIPHRK LILNLDLSSN SVITPLFEKM LSASDAGRIG RLVLPKKCAE  360
AYFPTISQPE GLPLKVQDAS GKEWVFQFRF WPNNNSRMYV LEGVTPCIQS MQLQAGDTGM  420
FFHVISIDHF YGTSIIRLSF ILDYSRNRIE NLHIFERHRW RQLGMPNQVH YLLPFSLTFS  480
RIDPEGRLVM GFRKASNASA EQDTQSGKAG NGFSTSTEGN SKNSAGDSNA NLLLRPLKGS  540
AESRNSINTA DQGTWSKFDK SGFIQKDGPA ARSLQGPSKR KGSTLGSKSK RLRIENEDSM  600
ELKITWEEAQ ELLRPPPNHV PTTIVIEGHE IEEYE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5yzy_C1e-513004241110B3 domain-containing transcription repressor VAL1
5yzz_C1e-513004241110B3 domain-containing transcription repressor VAL1
5z00_C1e-513004241110B3 domain-containing transcription repressor VAL1
5z00_G1e-513004241110B3 domain-containing transcription repressor VAL1
5z00_K1e-513004241110B3 domain-containing transcription repressor VAL1
5z00_M1e-513004241110B3 domain-containing transcription repressor VAL1
6j9a_A1e-513004242111B3 domain-containing transcription repressor VAL1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008806760.10.0B3 domain-containing protein Os07g0563300-like
SwissprotQ0D5G41e-136Y7633_ORYSJ; B3 domain-containing protein Os07g0563300
TrEMBLA0A2H3Z1B30.0A0A2H3Z1B3_PHODC; B3 domain-containing protein Os07g0563300-like
STRINGXP_008806760.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP74903647
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G21550.12e-82VP1/ABI3-like 3