PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s809091g002
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family GATA
Protein Properties Length: 103aa    MW: 10876.3 Da    PI: 9.0988
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s809091g002genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA49.46.1e-164276133
               GATA  1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkk 33
                       C+nCg ++  Tp +Rrgp g+++LCnaCGl+++ k
  PDK_30s809091g002 42 CQNCGISEklTPAMRRGPAGPRSLCNACGLMWANK 76
                       ********************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004011.7E-63695IPR000679Zinc finger, GATA-type
SuperFamilySSF577162.71E-104083No hitNo description
CDDcd002024.22E-104176No hitNo description
Gene3DG3DSA:3.30.50.105.1E-144177IPR013088Zinc finger, NHR/GATA-type
PROSITE patternPS0034404269IPR000679Zinc finger, GATA-type
PfamPF003205.9E-144277IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 103 aa     Download sequence    Send to blast
MKRRKGQFAG KANPEDEASV SSSCDPAQSS SHDDNPREMK ICQNCGISEK LTPAMRRGPA  60
GPRSLCNACG LMWANKEYLS GIGPAGPLSP ASFKGPPNTN PKS
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250|UniProtKB:Q8LAU9}.
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250|UniProtKB:Q8LAU9}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By drought and salt stresses. {ECO:0000269|PubMed:19618278}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008777941.16e-52GATA transcription factor 19-like
SwissprotA2XKR77e-27GAT18_ORYSI; GATA transcription factor 18
SwissprotQ10F256e-27GAT18_ORYSJ; GATA transcription factor 18
TrEMBLA0A2H3X3X81e-50A0A2H3X3X8_PHODC; GATA transcription factor 19-like
STRINGXP_008777941.12e-51(Phoenix dactylifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51600.21e-21ZIM-LIKE 2
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]