PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PDK_30s810281g003

Organism

Phoenix dactylifera

Taxonomic ID

42345

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix

Family

HD-ZIP

Protein Properties

Length: 236aa MW: 27280.7 Da PI: 8.9948

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PDK_30s810281g003	genome	PDK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	57.6	2.1e-18	90	144	2	56
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ ++t+eql+ Le+ F+++++++++++++LA +l+L rqV vWFqNrRa+ k PDK_30s810281g003 90 RKKLRLTREQLTFLENSFREHNTLNQTQKQQLAYQLNLRPRQVEVWFQNRRARTK 144 678899***********************************************98 PP
2	HD-ZIP_I/II	115.2	3.9e-37	90	178	1	89
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLre 89 +kk+rl++eq+++LE+sF+e+++L++++K++la +L+l+prqv+vWFqnrRARtk+kq+E+d+++Lk+ +++l++en+rL++e eeLr+ PDK_30s810281g003 90 RKKLRLTREQLTFLENSFREHNTLNQTQKQQLAYQLNLRPRQVEVWFQNRRARTKLKQTEVDCAFLKKYCENLRNENRRLKRELEELRA 178 69*************************************************************************************94 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	2.26E-19	79	147	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	1.6E-18	83	149	IPR009057	Homeodomain-like
PROSITE profile	PS50071	17.621	86	146	IPR001356	Homeobox domain
SMART	SM00389	7.6E-15	88	150	IPR001356	Homeobox domain
CDD	cd00086	2.58E-14	90	147	No hit	No description
Pfam	PF00046	6.4E-16	90	144	IPR001356	Homeobox domain
PROSITE pattern	PS00027	0	121	144	IPR017970	Homeobox, conserved site
SMART	SM00340	4.2E-16	146	189	IPR003106	Leucine zipper, homeobox-associated
Pfam	PF02183	3.0E-9	146	179	IPR003106	Leucine zipper, homeobox-associated

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 236 aa Download sequence Send to blast
MEEDECNIGL GLAIGAGRHF TSNQSGNGER KPPVQFHILF PPRPKEGEEE EEEEPTRDKE 60 RHKSKHINEE EDSSTKDIIS DGGSNRVGMR KKLRLTREQL TFLENSFREH NTLNQTQKQQ 120 LAYQLNLRPR QVEVWFQNRR ARTKLKQTEV DCAFLKKYCE NLRNENRRLK RELEELRAME 180 PGYPFHTRVP KAATPTMCPS CKRIMASGSE KGNGVLDGRK GRDQLKPVNN GLPLDD

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	138	146	RRARTKLKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.
UniProt	Probable transcription factor. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_026660422.1	1e-172	homeobox-leucine zipper protein HAT9-like
Swissprot	A2Z1U1	8e-49	HOX11_ORYSI; Homeobox-leucine zipper protein HOX11
Swissprot	P46665	1e-48	HAT14_ARATH; Homeobox-leucine zipper protein HAT14
TrEMBL	A0A3Q0I4S7	1e-171	A0A3Q0I4S7_PHODC; homeobox-leucine zipper protein HAT9-like
STRING	XP_008789723.1	1e-161	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP8130	34	48

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06710.1	2e-40	homeobox from Arabidopsis thaliana