PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s811301g001
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family GRAS
Protein Properties Length: 160aa    MW: 17740.5 Da    PI: 9.8472
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s811301g001genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS133.32.7e-41313316149
               GRAS  16 dlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqaIleave 107
                        +l++a+ lL ++selasp g++ +R+aayf  A   r+++s  + y+ l+ ++ +  + ++  +a ++++ + P++kfsh+taNqaI ea++
  PDK_30s811301g001   3 HLAEARDLLPEISELASPFGSSPERVAAYFGHA---RIVSSFLGAYSPLALKSLTLARNQKISQAWQAYNSIAPLVKFSHFTANQAIFEALD 91 
                        6789***************************87...9***9*********9999999999999***************************** PP

               GRAS 108 geervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgs 149
                        ge+rvH+iD+di+qGlQWp L++ LasRp++  s+RiTg++ 
  PDK_30s811301g001  92 GEDRVHVIDLDIMQGLQWPGLFHILASRPAKFSSVRITGLAV 133
                        ***************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098525.9731160IPR005202Transcription factor GRAS
PfamPF035149.2E-393133IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 160 aa     Download sequence    Send to blast
MDHLAEARDL LPEISELASP FGSSPERVAA YFGHARIVSS FLGAYSPLAL KSLTLARNQK  60
ISQAWQAYNS IAPLVKFSHF TANQAIFEAL DGEDRVHVID LDIMQGLQWP GLFHILASRP  120
AKFSSVRITG LAVVKVMGAK FSRTVTLLRW LWNGIYSVIQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A2e-45213332166Protein SCARECROW
5b3h_D2e-45213332166Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1201402e-42AK120140.1 Oryza sativa Japonica Group cDNA clone:J013027P17, full insert sequence.
GenBankAP0038662e-42AP003866.3 Oryza sativa Japonica Group genomic DNA, chromosome 7, BAC clone:OJ1092_A07.
GenBankAP0149632e-42AP014963.1 Oryza sativa Japonica Group DNA, chromosome 7, cultivar: Nipponbare, complete sequence.
GenBankCP0126152e-42CP012615.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 7 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008799890.14e-85LOW QUALITY PROTEIN: scarecrow-like protein 23
SwissprotQ9FHZ11e-58SCL23_ARATH; Scarecrow-like protein 23
TrEMBLA0A2H3YJU98e-84A0A2H3YJU9_PHODC; LOW QUALITY PROTEIN: scarecrow-like protein 23
STRINGXP_008799890.11e-84(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP137138122
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41920.15e-61GRAS family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Yoon EK, et al.
    Conservation and Diversification of the SHR-SCR-SCL23 Regulatory Network in the Development of the Functional Endodermis in Arabidopsis Shoots.
    Mol Plant, 2016. 9(8): p. 1197-1209
    [PMID:27353361]