PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s815981g004
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family NAC
Protein Properties Length: 333aa    MW: 36155.3 Da    PI: 7.7372
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s815981g004genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM40.86.7e-1310418155128
                NAM  55 ekewyfFskrdkkyatgk..rknratksgyWkatgkdkevlsk.kgelvglkktLvfy.kgrapkgektdWvmheyrl 128
                         +e+y+F++r++++a+g+  r+nr t +g+W+     + +++   +e++  k +Lvf  + +++k  + +W+mhey l
  PDK_30s815981g004 104 GEEVYYFTPRHRASANGSvcRANRNTGEGFWHGNAWGQLIFKDgFSEVIRHKSSLVFKfRDSQRKRLHPNWIMHEYLL 181
                        5799***********99888*************99999999986678899*******85668888889********76 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100516.42821197IPR003441NAC domain
PfamPF023654.0E-7102180IPR003441NAC domain
SuperFamilySSF1019413.14E-15104197IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 333 aa     Download sequence    Send to blast
MGTLSYSPSA SSLSDMPVAP YPIGFSVATL APSSSSSDLR PEFISTKESF PTRVPSSEST  60
SSGSVGSIFS RGSFLPHSLI QPQASTLSSS SNIGHGGDFM HGVGEEVYYF TPRHRASANG  120
SVCRANRNTG EGFWHGNAWG QLIFKDGFSE VIRHKSSLVF KFRDSQRKRL HPNWIMHEYL  180
LHSPDGKKMA LCRIYPKGNS KEAGDDFPAA HDRKRRRIHA TRSTPLFDQA YEANDCSSSD  240
GVVNVTTAWT EQKIASQLVP LPGVLVDDRS TSTTIPAFTS RDAGFIDSNI LNWVDNVILA  300
PPSSPTSVSS GNQPMEVPPP GVLVDDVSNI SYK
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1212216RKRRR
2213217KRRRI
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G08790.14e-11NAC family protein