PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s817321g001
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family MYB
Protein Properties Length: 301aa    MW: 33796 Da    PI: 7.2575
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s817321g001genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding53.26.9e-171461148
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
    Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                       rg W++eEde+l++ +  +G g+W++++r  g+ R++k+c++rw +yl
  PDK_30s817321g001 14 RGLWSPEEDEKLIKHISTFGHGCWSSVPRLAGLQRCGKSCRLRWINYL 61
                       788*******************************************97 PP
2Myb_DNA-binding48.71.7e-1567110146
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
    Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                        rg+++++E+ l++++++ lG++ W+ Ia+ ++ gRt++++k++w++
  PDK_30s817321g001  67 RGSFSAQEESLIIELHRVLGNK-WAQIAKQLP-GRTDNEVKNFWNS 110
                        899*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.608.5E-26664IPR009057Homeodomain-like
PROSITE profilePS5129417.643961IPR017930Myb domain
SuperFamilySSF466897.86E-2912108IPR009057Homeodomain-like
SMARTSM007176.9E-131363IPR001005SANT/Myb domain
PfamPF002495.9E-151461IPR001005SANT/Myb domain
CDDcd001675.74E-121761No hitNo description
PROSITE profilePS5129424.81762116IPR017930Myb domain
Gene3DG3DSA:1.10.10.606.9E-2565116IPR009057Homeodomain-like
SMARTSM007173.6E-1566114IPR001005SANT/Myb domain
PfamPF002492.5E-1467110IPR001005SANT/Myb domain
CDDcd001674.41E-1169112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009739Biological Processresponse to gibberellin
GO:0009834Biological Processplant-type secondary cell wall biogenesis
GO:0009901Biological Processanther dehiscence
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 301 aa     Download sequence    Send to blast
MGRHSCCNKQ KVRRGLWSPE EDEKLIKHIS TFGHGCWSSV PRLAGLQRCG KSCRLRWINY  60
LRPDLKRGSF SAQEESLIIE LHRVLGNKWA QIAKQLPGRT DNEVKNFWNS NIKKKLMAHA  120
VGGLNPISCT DHYYILNGTP MPHGYDGHDM TAHIANRANA PSPLEASSYS HTWPSDPRHH  180
LHQRPDDHRH RVEDYGGAPV DNDEIVPLQY TEAPCSGSKL VVAYDQSVDT QECNIPTLSV  240
SCEIDANARV PSFPTRPHLY TPQQSTNPMD FMDMIMGSSS SGEVSDDSLA MVPSLQPHWV  300
P
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-29141167108B-MYB
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008775155.10.0transcription factor MYB83-like
TrEMBLA0A2H3WXG90.0A0A2H3WXG9_PHODC; transcription factor MYB83-like
STRINGXP_008775155.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP128133035
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13890.25e-73myb domain protein 26