PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PDK_30s817471g001

Organism

Phoenix dactylifera

Taxonomic ID

42345

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix

Family

LBD

Protein Properties

Length: 210aa MW: 22700.8 Da PI: 8.5966

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PDK_30s817471g001	genome	PDK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	132.6	1.6e-41	41	140	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlka 92 +CaaCk+lrr+Ca++C+++pyfp ++p+kfa vhk+FGasnv+k+l ++pe +r da++slvyeA++r+ dPvyG++g +++lqqq++ l+a PDK_30s817471g001 41 PCAACKLLRRRCAQECPFSPYFPPHEPQKFASVHKVFGASNVSKMLMEVPEAQRADAANSLVYEANMRLGDPVYGCMGAVSALQQQVQALEA 132 7***************************************************************************************** PP DUF260 93 elallkee 100 el ++++e PDK_30s817471g001 133 ELRMVRAE 140 999887 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	25.917	40	141	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	8.3E-42	41	138	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 210 aa Download sequence Send to blast
MSTERERFDE VGKKIKRETD DTTDRMGRRL GPVGTLNTIT PCAACKLLRR RCAQECPFSP 60 YFPPHEPQKF ASVHKVFGAS NVSKMLMEVP EAQRADAANS LVYEANMRLG DPVYGCMGAV 120 SALQQQVQAL EAELRMVRAE ILKHKCRQAS VHVLPTSHAA LLAASGDVSV AAPPRPASSA 180 SSSSIYTTPP STSSTDYSSI NPNGNVAFFG

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	3e-44	41	146	11	116	LOB family transfactor Ramosa2.1
5ly0_B	3e-44	41	146	11	116	LOB family transfactor Ramosa2.1
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008810564.1	1e-156	LOB domain-containing protein 15-like
Swissprot	Q8L5T5	1e-77	LBD15_ARATH; LOB domain-containing protein 15
TrEMBL	A0A2H3ZAG5	1e-154	A0A2H3ZAG5_PHODC; LOB domain-containing protein 15-like
STRING	XP_008810564.1	1e-155	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2630	38	91

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G40470.1	2e-72	LOB domain-containing protein 15

Publications ? help Back to Top
Ohashi-Ito K,Iwamoto K,Fukuda H LOB DOMAIN-CONTAINING PROTEIN 15 Positively Regulates Expression of VND7, a Master Regulator of Tracheary Elements. Plant Cell Physiol., 2018. 59(5): p. 989-996 [PMID:29444288]