PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s819341g001
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family AP2
Protein Properties Length: 385aa    MW: 42260.7 Da    PI: 8.9171
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s819341g001genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP248.61.9e-153695155
                AP2  1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55
                       s y+GV++++++gr++A+++d  +   g  ++ ++++lg ++ +e+Aa+a++ a++k++g
  PDK_30s819341g001 36 SIYRGVTRHRWTGRYEAHLWDnSCRrEGqsRKgRQVYLGGYDKEEKAARAYDLAALKYWG 95
                       57*******************666664477446*************************98 PP
2AP247.83.6e-15138189155
                AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                        s y+GV+++++ grW A+I  +     +k  +lg+f t eeAa+a++ a+ k++g
  PDK_30s819341g001 138 SIYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 189
                        57****************988532...5************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.9E-123695IPR001471AP2/ERF domain
CDDcd000186.40E-2136105No hitNo description
SuperFamilySSF541718.5E-1836105IPR016177DNA-binding domain
PROSITE profilePS5103219.2337103IPR001471AP2/ERF domain
SMARTSM003807.3E-3037109IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.4E-1637104IPR001471AP2/ERF domain
PRINTSPR003671.6E-63849IPR001471AP2/ERF domain
CDDcd000189.21E-24138199No hitNo description
PfamPF008474.4E-10138189IPR001471AP2/ERF domain
SuperFamilySSF541714.77E-18138199IPR016177DNA-binding domain
PROSITE profilePS5103219.045139197IPR001471AP2/ERF domain
SMARTSM003807.9E-34139203IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.7E-18139197IPR001471AP2/ERF domain
PRINTSPR003671.6E-6179199IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009845Biological Processseed germination
GO:0040019Biological Processpositive regulation of embryonic development
GO:0048364Biological Processroot development
GO:0060772Biological Processleaf phyllotactic patterning
GO:0060774Biological Processauxin mediated signaling pathway involved in phyllotactic patterning
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 385 aa     Download sequence    Send to blast
MTAEERGGSS EVAGLAVAAA PAESRKAVET FGQRTSIYRG VTRHRWTGRY EAHLWDNSCR  60
REGQSRKGRQ VYLGGYDKEE KAARAYDLAA LKYWGPTTTT NFPISNYEKE LEEMKNMTRQ  120
EFVASLRRKS SGFSRGASIY RGVTRHHQHG RWQARIGRVA GNKDLYLGTF STQEEAAEAY  180
DIAAIKFRGL NAVTNFDISR YDVKSIANRN LPIGGMTGRA SKASESSSSC SSDAVTVEAK  240
QLLDGRDPSA SLGFAALPIK HDQEFWSLFA LHQQQQQQQQ QSNQASGFGL FSSGVTVDFS  300
TASNGVMSQG FGGSVVWNNG VLEQQQEQSQ NNSCSSIPYA TPIAFGGNYE GSGYVGSWVT  360
PPPSYYHEAA KPNVAVFQTP IFGME
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Involved in the regulation of floral organs size. {ECO:0000250, ECO:0000269|PubMed:15988559}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY6911960.0AY691196.1 Elaeis guineensis AP2 protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008803593.10.0AP2-like ethylene-responsive transcription factor AIL5
SwissprotQ6PQQ31e-145AIL5_ARATH; AP2-like ethylene-responsive transcription factor AIL5
TrEMBLA0A2H3YU820.0A0A2H3YU82_PHODC; AP2-like ethylene-responsive transcription factor AIL5
STRINGXP_008803593.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP79738151
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57390.11e-132AINTEGUMENTA-like 5
Publications ? help Back to Top
  1. Todd J,Post-Beittenmiller D,Jaworski JG
    KCS1 encodes a fatty acid elongase 3-ketoacyl-CoA synthase affecting wax biosynthesis in Arabidopsis thaliana.
    Plant J., 1999. 17(2): p. 119-30
    [PMID:10074711]
  2. Molitor AM,Bu Z,Yu Y,Shen WH
    Arabidopsis AL PHD-PRC1 complexes promote seed germination through H3K4me3-to-H3K27me3 chromatin state switch in repression of seed developmental genes.
    PLoS Genet., 2014. 10(1): p. e1004091
    [PMID:24465219]
  3. Feng J,Chen D,Berr A,Shen WH
    ZRF1 Chromatin Regulators Have Polycomb Silencing and Independent Roles in Development.
    Plant Physiol., 2016. 172(3): p. 1746-1759
    [PMID:27630184]
  4. Santuari L, et al.
    The PLETHORA Gene Regulatory Network Guides Growth and Cell Differentiation in Arabidopsis Roots.
    Plant Cell, 2016. 28(12): p. 2937-2951
    [PMID:27920338]
  5. Du Y,Scheres B
    PLETHORA transcription factors orchestrate de novo organ patterning during Arabidopsis lateral root outgrowth.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(44): p. 11709-11714
    [PMID:29078398]