PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s821471g001
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family ARF
Protein Properties Length: 729aa    MW: 81108.5 Da    PI: 6.2202
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s821471g001genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B374.11.7e-23147247198
                        EEEE-..-HHHHTT-EE--HHH.HTT.....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
                 B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 
                        f+k lt sd++++g +++ +++a+e+     +++++ +++l+ +d++g +W++k+i+r++++r++lt+GW+ Fv +++L +gD +vF   + 
  PDK_30s821471g001 147 FCKSLTASDTSTHGGFSVLRRHATEClppldMSQPTPTQELVAKDLHGFEWRFKHIFRGQPRRHLLTTGWSTFVTSKRLVAGDAFVFL--RG 236
                        99*****************************77777888*************************************************..44 PP

                        SEE..EEEEE- CS
                 B3  88 sefelvvkvfr 98 
                        +++el+v+v+r
  PDK_30s821471g001 237 ETGELRVGVRR 247
                        9999*****98 PP
2Auxin_resp87.52.7e-29273352183
         Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                        a+ha+st+s F v+ +Pr+  s+F+v v+k+++a+k+ ++vGmR +m+fe+ed +e+ ++Gtvvgv+ +++ +W +SkWr+Lk
  PDK_30s821471g001 273 ASHAISTGSLFIVCCKPRT--SQFIVGVNKYLEAVKNGFTVGMRCRMRFEGEDGPEKWFTGTVVGVEGVSS-QWADSKWRCLK 352
                        789***************6..9**********************************************887.*********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019362.75E-40135276IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.0E-37141262IPR015300DNA-binding pseudobarrel domain
CDDcd100171.88E-19145247No hitNo description
PfamPF023622.0E-21147247IPR003340B3 DNA binding domain
PROSITE profilePS5086311.716147249IPR003340B3 DNA binding domain
SMARTSM010196.5E-22147249IPR003340B3 DNA binding domain
PfamPF065074.6E-27273352IPR010525Auxin response factor
PfamPF023091.4E-5599646IPR033389AUX/IAA domain
SuperFamilySSF542772.22E-11608686No hitNo description
PROSITE profilePS5174526.775610691IPR000270PB1 domain
PfamPF023097.8E-7654698IPR033389AUX/IAA domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 729 aa     Download sequence    Send to blast
MASFGVSWRF PDSFCVFVCF LFFVLIGFSI AGFLIGLGGQ DLTEELWRLC AGPLVEVPRE  60
NERVFYFPQG HMEQLEASTN QELDQQIPRF NLPSKILCRV VNVQLRAESE TDEVYVQITL  120
HPEPDESEPT SLDLSLPERR RPTVHSFCKS LTASDTSTHG GFSVLRRHAT ECLPPLDMSQ  180
PTPTQELVAK DLHGFEWRFK HIFRGQPRRH LLTTGWSTFV TSKRLVAGDA FVFLRGETGE  240
LRVGVRRLAE QQSMIPTSVI SSQSMHLGVL ATASHAISTG SLFIVCCKPR TSQFIVGVNK  300
YLEAVKNGFT VGMRCRMRFE GEDGPEKWFT GTVVGVEGVS SQWADSKWRC LKVQWDEATS  360
ILRPDRVSPW EIEPFNAPAP ALNALQPVLF KNKRPRLPMD VVDHPVLGQQ GTSRCHDLAA  420
LSSVDANSSE TQVVWPCMQK EIKGGNGVQN GPGSCDTIVP DGWLKDLRSP VMSPLSSLTD  480
VSLKLFQDMN DETKVTSWPV IPGSTLEEPT LKLGNGVEEW KKPEVGSSSC RLFGIDLMNH  540
SKSTTISEKA ITAPAFTISA PPIEGPPSKA PASVDVSDQQ SGLSKASREQ KRGLDSSPKE  600
IQSKHHGSTR SRTKVHMQGM AVGRAVDLMN LEGYSDLITE LEQMFEIEGE LRQRNKWEIV  660
FTDDEGDMML VGDDPWPLFC KMVRKMFIYT SEEVRKMKPK SKFSGPSADA EEAGTRVDAA  720
FIQKEPKAE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A1e-1723637713357Auxin response factor 1
4ldw_A1e-1723637713357Auxin response factor 1
4ldw_B1e-1723637713357Auxin response factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. {ECO:0000269|PubMed:12036261}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008783166.10.0auxin response factor 9-like
SwissprotQ9XED80.0ARFI_ARATH; Auxin response factor 9
TrEMBLA0A2H3XG740.0A0A2H3XG74_PHODC; Auxin response factor
STRINGXP_008783166.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP108236116
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G23980.10.0auxin response factor 9