PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s823741g001
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family MYB
Protein Properties Length: 185aa    MW: 20806.7 Da    PI: 10.2506
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s823741g001genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding621.2e-191257147
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
    Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                       +g+W++eEde l ++v+++G ++W++I++ ++ gR++k+c++rw + 
  PDK_30s823741g001 12 KGPWSPEEDESLQKLVQKHGARNWSLISKAIP-GRSGKSCRLRWCNQ 57
                       79******************************.***********985 PP
2Myb_DNA-binding55.61.2e-1766108347
                        SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
    Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                        ++T+eEd+ +++a++++G++ W+tIar +  gRt++ +k++w++ 
  PDK_30s823741g001  66 PFTPEEDDAIIRAHRRFGNK-WATIARLLS-GRTDNAIKNHWNST 108
                        89******************.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129426.925762IPR017930Myb domain
SuperFamilySSF466893.42E-339105IPR009057Homeodomain-like
SMARTSM007171.2E-161160IPR001005SANT/Myb domain
PfamPF002493.5E-191257IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.2E-271365IPR009057Homeodomain-like
CDDcd001671.91E-151456No hitNo description
SMARTSM007174.8E-1563111IPR001005SANT/Myb domain
PROSITE profilePS5129420.90564113IPR017930Myb domain
CDDcd001674.09E-1266109No hitNo description
PfamPF002496.6E-1566108IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.2E-2466112IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 185 aa     Download sequence    Send to blast
MSNRSKDMDR IKGPWSPEED ESLQKLVQKH GARNWSLISK AIPGRSGKSC RLRWCNQLSP  60
QVEHRPFTPE EDDAIIRAHR RFGNKWATIA RLLSGRTDNA IKNHWNSTLK RKYSSAAVAP  120
AVDDAAMRYV SYATVGLLAE EESNSGPRTE IMSPRCVLSS TSIPLPLMSV PFPPPQSFYT  180
KEKSP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1mse_C2e-41111123104C-Myb DNA-Binding Domain
1msf_C2e-41111123104C-Myb DNA-Binding Domain
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that functions in salt stress response. Acts as negative regulator of NHX7/SOS1 and CBL4/SOS3 induction in response to salt stress (PubMed:23809151). In response to auxin, activates the transcription of the auxin-responsive gene IAA19. The IAA19 transcription activation by MYB73 is enhanced by direct interaction between MYB73 and PYL8 (PubMed:24894996). {ECO:0000269|PubMed:23809151, ECO:0000269|PubMed:24894996}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00632PBMTransfer from PK28565.1Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salt stress. {ECO:0000269|PubMed:23809151}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM6614581e-96KM661458.1 Ananas bracteatus clone 43635a microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008811216.14e-89transcription factor MYB44-like isoform X1
SwissprotO231601e-64MYB73_ARATH; Transcription factor MYB73
TrEMBLA0A2H3ZC139e-88A0A2H3ZC13_PHODC; transcription factor MYB44-like isoform X1
STRINGXP_008811216.11e-88(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP78938154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G23290.11e-67myb domain protein 70
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]