PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PDK_30s825821g004

Organism

Phoenix dactylifera

Taxonomic ID

42345

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix

Family

C2H2

Protein Properties

Length: 494aa MW: 53550.4 Da PI: 8.7683

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PDK_30s825821g004	genome	PDK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17.2	1.4e-05	52	74	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H PDK_30s825821g004 52 FVCEICNKGFQRDQNLQLHRRGH 74 89*******************88 PP
2	zf-C2H2	12.4	0.00046	128	150	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC +C+k + +s+ k H + + PDK_30s825821g004 128 WKCDKCSKKYAVQSDWKAHTKIC 150 58*****************9987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.160.60	1.6E-5	51	74	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	7.86E-7	51	74	No hit	No description
Pfam	PF12171	7.8E-5	52	74	IPR022755	Zinc finger, double-stranded RNA binding
PROSITE profile	PS50157	10.949	52	74	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.017	52	74	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	54	74	IPR007087	Zinc finger, C2H2
SMART	SM00355	250	93	123	IPR015880	Zinc finger, C2H2-like
Gene3D	G3DSA:3.30.160.60	9.4E-4	116	149	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	7.86E-7	123	148	No hit	No description
SMART	SM00355	140	128	148	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 494 aa Download sequence Send to blast
MSNITGDGGS FSSENHTGEE EVKKKRNLPG TPDPTAEVIA LSPTTLMATN RFVCEICNKG 60 FQRDQNLQLH RRGHNLPWKL RQRTSTEVRK RVYICPETTC VHHNPSRALG DLTGIKKHFC 120 RKHGEKKWKC DKCSKKYAVQ SDWKAHTKIC GTKEYKCDCG TIFSRFTSYT NRFNVERDSF 180 ITHRAFCDAL VEENNKTSSG LMPTMGSNLQ AHRVPELMMP IGTPSTADSP VGLSDFNNHD 240 IKNPLKALPY DLMPTPLRSH TMAGSMLSTT TAATLFSSRT FPSGYHVLSD STKMGQLAIG 300 SADMSATALL QKAAQLGATA TCGATAMTSS KTHRSFISEM AGPDQNSTIR PYGLYDGVQT 360 HGMGVDGGGF VNQFFDTTMG ESSGLSDIGM FPLTAGMLNN SGGGGGGSQG GSGGSRLSYG 420 GGGSGDVMTV DFLGVGRART VPAMGLHEKQ QQQQQGMQFG GVGQQRLQEL HPFQRQEQQL 480 SYGQAAMEKA LWDV

Sequence ? help Back to Top

Protein Sequence Length: 494 aa Download sequence Send to blast

MSNITGDGGS FSSENHTGEE EVKKKRNLPG TPDPTAEVIA LSPTTLMATN RFVCEICNKG  60
FQRDQNLQLH RRGHNLPWKL RQRTSTEVRK RVYICPETTC VHHNPSRALG DLTGIKKHFC  120
RKHGEKKWKC DKCSKKYAVQ SDWKAHTKIC GTKEYKCDCG TIFSRFTSYT NRFNVERDSF  180
ITHRAFCDAL VEENNKTSSG LMPTMGSNLQ AHRVPELMMP IGTPSTADSP VGLSDFNNHD  240
IKNPLKALPY DLMPTPLRSH TMAGSMLSTT TAATLFSSRT FPSGYHVLSD STKMGQLAIG  300
SADMSATALL QKAAQLGATA TCGATAMTSS KTHRSFISEM AGPDQNSTIR PYGLYDGVQT  360
HGMGVDGGGF VNQFFDTTMG ESSGLSDIGM FPLTAGMLNN SGGGGGGSQG GSGGSRLSYG  420
GGGSGDVMTV DFLGVGRART VPAMGLHEKQ QQQQQGMQFG GVGQQRLQEL HPFQRQEQQL  480
SYGQAAMEKA LWDV

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_C	4e-30	124	199	3	67	Zinc finger protein JACKDAW
5b3h_F	4e-30	124	199	3	67	Zinc finger protein JACKDAW
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that acts as a positive regulator of gibberellin (GA) action, homeostasis and signaling. GA converts the GAF1 complex from transcriptional activator to repressor via the degradation of DELLA proteins. {ECO:0000269\|PubMed:25035403}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EU956926	2e-45	EU956926.1 Zea mays clone 1577561 mRNA sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008800868.1	0.0	protein indeterminate-domain 2-like
Swissprot	Q9SCQ6	1e-110	IDD2_ARATH; Zinc finger protein GAI-ASSOCIATED FACTOR 1
TrEMBL	A0A2H3YM78	0.0	A0A2H3YM78_PHODC; protein indeterminate-domain 2-like
STRING	XP_008800868.1	0.0	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP202	38	320

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G66730.1	5e-98	C2H2-like zinc finger protein

Publications ? help Back to Top
Fukazawa J, et al. DELLAs function as coactivators of GAI-ASSOCIATED FACTOR1 in regulation of gibberellin homeostasis and signaling in Arabidopsis. Plant Cell, 2014. 26(7): p. 2920-38 [PMID:25035403] Moreno-Risueno MA, et al. Transcriptional control of tissue formation throughout root development. Science, 2015. 350(6259): p. 426-30 [PMID:26494755] Khare D, et al. Root avoidance of toxic metals requires the GeBP-LIKE 4 transcription factor in Arabidopsis thaliana. New Phytol., 2017. 213(3): p. 1257-1273 [PMID:27768815]