PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s826561g001
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family C2H2
Protein Properties Length: 292aa    MW: 32537.7 Da    PI: 7.9353
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s826561g001genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H220.81e-0692113223
                        EETTTTEEESSHHHHHHHHHHT CS
            zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                         C++C k F+r+ nL+ H+r H
  PDK_30s826561g001  92 FCSICRKGFKRSANLRMHMRGH 113
                        6*******************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.25E-590115No hitNo description
PROSITE profilePS5015711.26191118IPR007087Zinc finger, C2H2
SMARTSM003550.007491113IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.607.2E-692142IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS00028093113IPR007087Zinc finger, C2H2
SMARTSM0035570140173IPR015880Zinc finger, C2H2-like
SMARTSM0035521178204IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 292 aa     Download sequence    Send to blast
MTGTIGSTSS LALNGILQQN KDFPWKTSKA MQHRDLIKSL THTGDEGIKP VPINHHDAKD  60
HKDSENGEDL PPSSYEVLEP KKEEILAPHT HFCSICRKGF KRSANLRMHM RGHGDEYKSP  120
AALAKPSNEA SSESMALKRY SCPFIGCKRN KEHEKFQPLK TILCVKNHYK RSHCDKSYTC  180
SRCNTKKFSV LADLKTHEKH CGRHRWLCSC GTTFSRKDKL LGHFNLFPGH SPAISMGDVK  240
ASGVADQGRS NETMTEMGSL GSDFLGNAMD DVDDLDLEDA DDDPGSFSPL NF
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in aluminum tolerance. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008781514.10.0zinc finger protein STOP1 homolog
RefseqXP_017696850.10.0zinc finger protein STOP1 homolog
SwissprotQ943I61e-123STOP1_ORYSJ; Zinc finger protein STOP1 homolog
TrEMBLA0A2H3XBY90.0A0A2H3XBY9_PHODC; zinc finger protein STOP1 homolog
STRINGXP_008781514.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP151238111
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G34370.31e-108C2H2 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]