PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PDK_30s827291g008

Organism

Phoenix dactylifera

Taxonomic ID

42345

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix

Family

GRAS

Protein Properties

Length: 411aa MW: 46688 Da PI: 7.1079

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PDK_30s827291g008	genome	PDK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	402.7	3.7e-123	31	401	3	373
GRAS 3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfs 94 elL+ cAe ++ d ++a+++L+ ls+++sp+gd++ Rl++ ft+AL+ ++ + l + lpps s +n ++ +++ +++v+P+l+f+ PDK_30s827291g008 31 ELLIGCAELIHRADYSAARRILSLLSNISSPHGDSTDRLVHQFTRALSLHIDS----LTHLLPPSFFS-SNGDTLQSSYLSLNKVTPFLRFA 117 69************************************************9....88888888887.678888899999******* PP GRAS 95 hltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRp..egppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvl... 181 hltaNqaIleav+g + +Hi+Dfd s+G+QWp+Llqa+a+R+ ++ ps+RiTg g + + l++tg+rL+ fA++lg++f+f++l PDK_30s827291g008 118 HLTANQAILEAVDGRQSIHILDFDTSHGVQWPPLLQAIAERSepSNRPSVRITGTGT----DLDVLHRTGDRLKAFASSLGLRFQFHPLhlp 205 *************************************9667799*****....************************555 PP GRAS 182 vakrledleleeLrvkpgEalaVnlvlqlhrlldesvsles..erdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsl 271 +++ ++ ++++++ +pgE+laVn+ l lh+ll++++s + + +L++vk+++P vv+v+e+ea+hns+ Fl+rf+eal++y+a+f+sl PDK_30s827291g008 206 TTNPDTSASFSSFQPHPGETLAVNCTLFLHKLLRDRGSDDPacKLMGFLRAVKEMNPAVVTVAEREANHNSPVFLQRFMEALDHYAAVFESL 297 45555666888889999**************999998778899***************************************** PP GRAS 272 eaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrv.eeesgslvlg 361 ea+lp++s+er+ vE+++lgrei+++v +eg+errerhe++e W++ ++ GF++++ls +a +qaklllr ++ s+gy++ + ++++l+l PDK_30s827291g008 298 EATLPPKSRERQEVEEMWLGREIEDIVGKEGEERRERHERFEWWEALMRGRGFSSLQLSPFALTQAKLLLRLHYpSEGYQLiQMSKNCLFLA 389 ***************************************************************************9625789** PP GRAS 362 WkdrpLvsvSaW 373 W+++pL+svS+W PDK_30s827291g008 390 WQHKPLFSVSSW 401 ********** PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	58.083	3	380	IPR005202	Transcription factor GRAS
Pfam	PF03514	1.3E-120	31	401	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 411 aa Download sequence Send to blast
MTREETARIL SGIHQSKFVH GDKTKDGWSW ELLIGCAELI HRADYSAARR ILSLLSNISS 60 PHGDSTDRLV HQFTRALSLH IDSLTHLLPP SFFSSNGDTL QSSYLSLNKV TPFLRFAHLT 120 ANQAILEAVD GRQSIHILDF DTSHGVQWPP LLQAIAERSE PSNRPSVRIT GTGTDLDVLH 180 RTGDRLKAFA SSLGLRFQFH PLHLPTTNPD TSASFSSFQP HPGETLAVNC TLFLHKLLRD 240 RGSDDPACKL MGFLRAVKEM NPAVVTVAER EANHNSPVFL QRFMEALDHY AAVFESLEAT 300 LPPKSRERQE VEEMWLGREI EDIVGKEGEE RRERHERFEW WEALMRGRGF SSLQLSPFAL 360 TQAKLLLRLH YPSEGYQLIQ MSKNCLFLAW QHKPLFSVSS WHIMQQSQKE P

Sequence ? help Back to Top

Protein Sequence Length: 411 aa Download sequence Send to blast

MTREETARIL SGIHQSKFVH GDKTKDGWSW ELLIGCAELI HRADYSAARR ILSLLSNISS  60
PHGDSTDRLV HQFTRALSLH IDSLTHLLPP SFFSSNGDTL QSSYLSLNKV TPFLRFAHLT  120
ANQAILEAVD GRQSIHILDF DTSHGVQWPP LLQAIAERSE PSNRPSVRIT GTGTDLDVLH  180
RTGDRLKAFA SSLGLRFQFH PLHLPTTNPD TSASFSSFQP HPGETLAVNC TLFLHKLLRD  240
RGSDDPACKL MGFLRAVKEM NPAVVTVAER EANHNSPVFL QRFMEALDHY AAVFESLEAT  300
LPPKSRERQE VEEMWLGREI EDIVGKEGEE RRERHERFEW WEALMRGRGF SSLQLSPFAL  360
TQAKLLLRLH YPSEGYQLIQ MSKNCLFLAW QHKPLFSVSS WHIMQQSQKE P

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5hyz_A	3e-60	63	402	37	375	GRAS family transcription factor containing protein, expressed
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor required for axillary (lateral) shoot meristem formation during vegetative development. Seems to act upstream of REVOLUTA. {ECO:0000269\|PubMed:12730136}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008806184.1	0.0	scarecrow-like protein 18
Swissprot	Q9ZWC5	1e-114	SCL18_ARATH; Scarecrow-like protein 18
TrEMBL	A0A2H3YZB9	0.0	A0A2H3YZB9_PHODC; scarecrow-like protein 18
STRING	XP_008806184.1	0.0	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3653	34	79

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G55580.1	1e-105	GRAS family protein

Publications ? help Back to Top
Zhang B, et al. Novel function of a putative MOC1 ortholog associated with spikelet number per spike in common wheat. Sci Rep, 2015. 5: p. 12211 [PMID:26197925]