PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PDK_30s830191g005

Organism

Phoenix dactylifera

Taxonomic ID

42345

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix

Family

Trihelix

Protein Properties

Length: 242aa MW: 28909.1 Da PI: 6.8063

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PDK_30s830191g005	genome	PDK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	83.9	2e-26	11	92	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 +W++qe+++Li +r ++e++l ++ +k+lWe+v+++mrerg++r+p qCk+kw+nl +ryk +++ + ++ ++cp+f++l+ PDK_30s830191g005 11 QWSEQETRELIGFRGDLERDLTVARWNKTLWEAVAARMRERGYRRTPDQCKCKWKNLVNRYKDTETADPEN----GRQCPFFEELH 92 7*************************************************************9999974....678****98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50090	8.153	4	68	IPR017877	Myb-like domain
Gene3D	G3DSA:1.10.10.60	2.8E-4	5	70	IPR009057	Homeodomain-like
Pfam	PF13837	1.3E-23	10	93	No hit	No description
CDD	cd12203	8.21E-20	11	75	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 242 aa Download sequence Send to blast
MGKEERVAQV QWSEQETREL IGFRGDLERD LTVARWNKTL WEAVAARMRE RGYRRTPDQC 60 KCKWKNLVNR YKDTETADPE NGRQCPFFEE LHAVFMERAR NMQRLLLESE SSASPSKKKL 120 KRLGADRSSG EFSEDDDEDD EDSDGEHPSK SRKKKADKGA QQQQQRTKAS SSIHELLQEF 180 LQQQQRVEVQ WREVMERRAQ ERRAFEQEWR QEEQRRMREE SRAEKRDALL TTLLNKLIQD 240 DF

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2ebi_A	7e-14	12	82	7	77	DNA binding protein GT-1
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008803970.1	1e-139	trihelix transcription factor GT-3b-like
TrEMBL	A0A2H3YU93	1e-137	A0A2H3YU93_PHODC; trihelix transcription factor GT-3b-like
STRING	XP_008803970.1	1e-138	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP10688	30	37

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G38250.1	7e-26	Trihelix family protein