PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PDK_30s830451g001

Organism

Phoenix dactylifera

Taxonomic ID

42345

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix

Family

NAC

Protein Properties

Length: 588aa MW: 66459 Da PI: 8.2578

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PDK_30s830451g001	genome	PDK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	115.8	4.4e-36	10	149	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk.............kvka..eekewyfFskrdkkyatgkrknra 77 l+pG+rF+P eelv +yL++++ +++l++ ++ike+++y+++P+d+ + k++yfF++r+ ky++g+r+ r PDK_30s830451g001 10 LAPGYRFRPFPEELVEFYLRPRLLNQPLPC-QAIKELNLYDFHPRDILGiafncsknyvffiG--NtpAGKHLYFFTPRKMKYPNGTRPARG 98 579*************************.89**********6346777777666542..13467799*************** PP NAM 78 tksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 t++gyWka+gkdk + +k+++++ +k+Lvf++g++ +g++t+W+m+ey++ PDK_30s830451g001 99 TNRGYWKASGKDKIIRDKDSKEIVRRKSLVFHEGHQGNGTRTRWLMQEYTI 149 ***********************************************86 PP
2	NAM	115.7	4.8e-36	200	325	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 l+pG++F P +elv++yL++k+ +++l++ +++ke+++y+++P+d+ ++ k++yfF++r+ ky++g+r+ r t+ gyWka+gkd+ + PDK_30s830451g001 200 LAPGYHFWPYPKELVKFYLRPKLLNQPLPC-QAVKELNLYDFHPRDILGNT-PAGKHLYFFTPRKMKYPHGTRPARGTNGGYWKASGKDQII 289 579*************************.88**********7443.45799******************************* PP NAM 93 lskkgelvglkktLvfykgrapkgektdWvmheyrl 128 +k+ +++g kk Lvf++g++ +g++t+W+m+ey++ PDK_30s830451g001 290 RDKDAKEIGRKKFLVFHEGHQGNGTRTRWLMQEYTI 325 ********************************86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.27E-38	9	174	IPR003441	NAC domain
PROSITE profile	PS51005	39.888	10	174	IPR003441	NAC domain
Pfam	PF02365	2.2E-18	12	149	IPR003441	NAC domain
SuperFamily	SSF101941	2.35E-41	199	350	IPR003441	NAC domain
PROSITE profile	PS51005	40.95	200	350	IPR003441	NAC domain
Pfam	PF02365	4.5E-18	202	325	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 588 aa Download sequence Send to blast
MEEDEGIGHL APGYRFRPFP EELVEFYLRP RLLNQPLPCQ AIKELNLYDF HPRDILGIAF 60 NCSKNYVFFI GNTPAGKHLY FFTPRKMKYP NGTRPARGTN RGYWKASGKD KIIRDKDSKE 120 IVRRKSLVFH EGHQGNGTRT RWLMQEYTIK EFWFTTDQNK NELGAVALCA IYLKPTPNQS 180 RDGELQVDEQ EEEDEGIGNL APGYHFWPYP KELVKFYLRP KLLNQPLPCQ AVKELNLYDF 240 HPRDILGNTP AGKHLYFFTP RKMKYPHGTR PARGTNGGYW KASGKDQIIR DKDAKEIGRK 300 KFLVFHEGHQ GNGTRTRWLM QEYTIKEFWF STDQNKDELG ALALCEIYLK PTPNQSRDGE 360 LQVDEQEVEE EGSPSHSSDN IFADRRVGPR PPPCNNSKDA PVASTSGCPS AFGPITARPG 420 PSMPSMGYNN LQCHNMASIL QSSLRPGVPH AMGGYRSSHQ IRPSPAHHHR PGHVGFDNAG 480 GLLLPGASYL PNGNRLHTMS PVQPDVLVHA SYCHCVVSEP SSSQFESSAF LSFGNQLMPY 540 GEFGIAAASS SQYQLPPLQF DFEAYLPMPS DFRTSSQTTL WPLPSHLS

Sequence ? help Back to Top

Protein Sequence Length: 588 aa Download sequence Send to blast

MEEDEGIGHL APGYRFRPFP EELVEFYLRP RLLNQPLPCQ AIKELNLYDF HPRDILGIAF  60
NCSKNYVFFI GNTPAGKHLY FFTPRKMKYP NGTRPARGTN RGYWKASGKD KIIRDKDSKE  120
IVRRKSLVFH EGHQGNGTRT RWLMQEYTIK EFWFTTDQNK NELGAVALCA IYLKPTPNQS  180
RDGELQVDEQ EEEDEGIGNL APGYHFWPYP KELVKFYLRP KLLNQPLPCQ AVKELNLYDF  240
HPRDILGNTP AGKHLYFFTP RKMKYPHGTR PARGTNGGYW KASGKDQIIR DKDAKEIGRK  300
KFLVFHEGHQ GNGTRTRWLM QEYTIKEFWF STDQNKDELG ALALCEIYLK PTPNQSRDGE  360
LQVDEQEVEE EGSPSHSSDN IFADRRVGPR PPPCNNSKDA PVASTSGCPS AFGPITARPG  420
PSMPSMGYNN LQCHNMASIL QSSLRPGVPH AMGGYRSSHQ IRPSPAHHHR PGHVGFDNAG  480
GLLLPGASYL PNGNRLHTMS PVQPDVLVHA SYCHCVVSEP SSSQFESSAF LSFGNQLMPY  540
GEFGIAAASS SQYQLPPLQF DFEAYLPMPS DFRTSSQTTL WPLPSHLS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	2e-25	10	355	16	170	NO APICAL MERISTEM PROTEIN
1ut4_B	2e-25	10	355	16	170	NO APICAL MERISTEM PROTEIN
1ut7_A	2e-25	10	355	16	170	NO APICAL MERISTEM PROTEIN
1ut7_B	2e-25	10	355	16	170	NO APICAL MERISTEM PROTEIN
4dul_A	2e-25	10	355	16	170	NAC domain-containing protein 19
4dul_B	2e-25	10	355	16	170	NAC domain-containing protein 19

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_026655911.1	0.0	NAC domain-containing protein 7-like isoform X1
TrEMBL	A0A3Q0HMG7	0.0	A0A3Q0HMG7_PHODC; NAC domain-containing protein 7-like isoform X1
STRING	XP_008812618.1	0.0	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP37531	2	3

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G10480.3	5e-31	NAC domain containing protein 50