PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PDK_30s831041g022

Organism

Phoenix dactylifera

Taxonomic ID

42345

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix

Family

MYB_related

Protein Properties

Length: 311aa MW: 34109.3 Da PI: 7.7525

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PDK_30s831041g022	genome	PDK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	39.8	1e-12	93	137	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT++E++ ++ + ++lG+g+W+ Iar Rt+ q+ s+ qky PDK_30s831041g022 93 PWTKDEHKMFLLGLQKLGKGDWRGIARNYVVSRTPTQVASHAQKY 137 8*******************************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	18.255	86	142	IPR017930	Myb domain
SuperFamily	SSF46689	3.51E-16	88	143	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	5.5E-19	89	141	IPR006447	Myb domain, plants
SMART	SM00717	4.0E-10	90	140	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	9.1E-11	90	136	IPR009057	Homeodomain-like
CDD	cd00167	4.71E-9	93	138	No hit	No description
Pfam	PF00249	2.0E-10	93	137	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0000122	Biological Process	negative regulation of transcription from RNA polymerase II promoter
GO:0009651	Biological Process	response to salt stress
GO:0009723	Biological Process	response to ethylene
GO:0009737	Biological Process	response to abscisic acid
GO:0009739	Biological Process	response to gibberellin
GO:0009751	Biological Process	response to salicylic acid
GO:0009753	Biological Process	response to jasmonic acid
GO:0030307	Biological Process	positive regulation of cell growth
GO:0046686	Biological Process	response to cadmium ion
GO:0048366	Biological Process	leaf development
GO:2000469	Biological Process	negative regulation of peroxidase activity
GO:0000976	Molecular Function	transcription regulatory region sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 311 aa Download sequence Send to blast
MTRRCSHCCH NGHNSRTCPN RGGVKIFGVR LTDGSIRKSA SMGNLSHLAA SSASPPDGPD 60 PGAAPAAAAE GYASEDFVQG SSSSCRDRKK GVPWTKDEHK MFLLGLQKLG KGDWRGIARN 120 YVVSRTPTQV ASHAQKYFIR QTNLTRRKRR SSLFDMVPDE PVEPQPTPMN CEEPEMQCSK 180 PPSEPPAMDE EAKSKHSDNP VVETADPEPE TLQCSYPVIP PAYFSPFFQF YIPCWPGYQT 240 DASEKQGHEI VKPTAMHPRT PIDIDELVGM SKLSIEEPMG ERAPLSLSSN LLGGSSRQSA 300 FHANPSTRTQ A

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription repressor that binds to 5'-TATCCA-3' elements in gene promoters. Contributes to the sugar-repressed transcription of promoters containing SRS or 5'-TATCCA-3' elements. Transcription repressor involved in a cold stress response pathway that confers cold tolerance. Suppresses the DREB1-dependent signaling pathway under prolonged cold stress. DREB1 responds quickly and transiently while MYBS3 responds slowly to cold stress. They may act sequentially and complementarily for adaptation to short- and long-term cold stress (PubMed:20130099). {ECO:0000269\|PubMed:12172034, ECO:0000269\|PubMed:20130099}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00551	DAP	Transfer from AT5G47390	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by sucrose and gibberellic acid (GA) (PubMed:12172034). Induced by cold stress in roots and shoots. Induced by salt stress in shoots. Down-regulated by abscisic aci (ABA) in shoots (PubMed:20130099). {ECO:0000269\|PubMed:12172034, ECO:0000269\|PubMed:20130099}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_026662237.1	0.0	transcription factor MYBS3-like isoform X2
Swissprot	Q7XC57	1e-140	MYBS3_ORYSJ; Transcription factor MYBS3
TrEMBL	A0A3Q0IA50	0.0	A0A3Q0IA50_PHODC; transcription factor MYBS3-like isoform X2
STRING	XP_008796132.1	0.0	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1939	37	91

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G47390.1	1e-103	MYB_related family protein

Publications ? help Back to Top
Rice Chromosome 10 Sequencing Consortium In-depth view of structure, activity, and evolution of rice chromosome 10. Science, 2003. 300(5625): p. 1566-9 [PMID:12791992] Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Su CF, et al. A novel MYBS3-dependent pathway confers cold tolerance in rice. Plant Physiol., 2010. 153(1): p. 145-58 [PMID:20130099]