PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PDK_30s832221g001

Organism

Phoenix dactylifera

Taxonomic ID

42345

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix

Family

LBD

Protein Properties

Length: 179aa MW: 19143 Da PI: 7.7733

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PDK_30s832221g001	genome	PDK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	81.9	1e-25	4	88	1	80
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvi 80 +C++C+vlr++C+++C+++p++ p++q++++ +++k++G++ +++l++a p++ r+++++sl+yeA+ r+ +P+yG+++v PDK_30s832221g001 4 SCNGCRVLRKGCNDSCTIRPCLqwiksPEAQANATVFLAKFYGRAGLMNLINAGPDHLRPAIFRSLLYEACGRIVNPIYGSAAVE 88 6*******************************************************************************99875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	13.848	3	110	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.1E-20	4	87	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 179 aa Download sequence Send to blast
MRMSCNGCRV LRKGCNDSCT IRPCLQWIKS PEAQANATVF LAKFYGRAGL MNLINAGPDH 60 LRPAIFRSLL YEACGRIVNP IYGSAAVENV LRGEPIVQIS SDSAAAVPPT KAHDIRHVAK 120 KADAAAELHK AEPHESGAEA EVVGLDLTLG LRPAEERRVE VASPGADACR VELGLGLFS

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KR076541	2e-64	KR076541.1 Boehmeria nivea lateral organ boundaries domain protein (LBD15) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008797833.1	2e-87	LOB domain-containing protein 41-like
Swissprot	Q9M886	2e-64	LBD41_ARATH; LOB domain-containing protein 41
TrEMBL	A0A2H3YF08	5e-86	A0A2H3YF08_PHODC; LOB domain-containing protein 41-like
STRING	XP_008797833.1	8e-87	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1235	37	127

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G02550.1	7e-67	LOB domain-containing protein 41