PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s832971g002
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family ERF
Protein Properties Length: 272aa    MW: 30223.8 Da    PI: 4.7906
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s832971g002genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.61.6e-18122173256
                AP2   2 gykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                        +++GVr+++ +g+++AeIrd  +   k  r++lg+f taeeAa a+++a+++++g+
  PDK_30s832971g002 122 HFRGVRRRP-WGKFAAEIRDtSR---KGMRVWLGTFNTAEEAALAYDRAALRMRGP 173
                        69*******.**********331...34**************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.102.9E-31121181IPR001471AP2/ERF domain
PfamPF008472.8E-14122172IPR001471AP2/ERF domain
SMARTSM003804.4E-37122186IPR001471AP2/ERF domain
CDDcd000182.17E-29122180No hitNo description
SuperFamilySSF541716.41E-23122182IPR016177DNA-binding domain
PROSITE profilePS5103223.117122180IPR001471AP2/ERF domain
PRINTSPR003673.1E-10123134IPR001471AP2/ERF domain
PRINTSPR003673.1E-10146162IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 272 aa     Download sequence    Send to blast
MTIELKRCEA NDKLLENVWA SFFAGNAPES CSSNDEPNKK PEDSRDWNEM PRLEGGEGNL  60
AVLQRLPSLG RWISMGAEIW DELLNGIIAS DSCETATLDS GYQACSSSTS KTLAAESVTP  120
RHFRGVRRRP WGKFAAEIRD TSRKGMRVWL GTFNTAEEAA LAYDRAALRM RGPQAHLNFP  180
MEAVAKASED AHLEQDLACI MSGPACPVYG CTETNYSPRK RTREWGIYDE VPAEPPAWKR  240
NSSNKGMVSN QVDVVELQDL GNEYLETLLS SL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A5e-27121182465ATERF1
3gcc_A5e-27121182465ATERF1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00441DAPTransfer from AT4G18450Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008798293.10.0ethylene-responsive transcription factor 1B
TrEMBLA0A2H3YG410.0A0A2H3YG41_PHODC; ethylene-responsive transcription factor 1B
STRINGXP_008798293.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP116162736
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18450.13e-28ERF family protein