PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s837021g005
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family C3H
Protein Properties Length: 239aa    MW: 27037.8 Da    PI: 9.2138
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s837021g005genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH18.34.1e-06104129126
                        --S---SGGGGTS--TTTTT-SS-SS CS
            zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                        y+++ C+ f+    C+yGd+C F+H+
  PDK_30s837021g005 104 YRRRDCQKFYTVEGCPYGDKCIFIHD 129
                        899********99************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.101.1E-55792IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.2E-8101131IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.01E-7102130IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.629103131IPR000571Zinc finger, CCCH-type
SMARTSM003560.033103130IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.5E-6161183IPR000571Zinc finger, CCCH-type
PROSITE profilePS501036.54164183IPR000571Zinc finger, CCCH-type
SMARTSM0035626164185IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 239 aa     Download sequence    Send to blast
MEDDYHLWNG ESSSYTVSNA IQPQSRGWSE LPPNKKSRNS NGDSQGDWSG RSKDIGKMFF  60
KAKLCCRFRA GTWLYVKNCH FAYGIEELRK PPPNWEEIVA QRSYRRRDCQ KFYTVEGCPY  120
GDKCIFIHDE QLKALSSVVI SLSPMVGSGG YGGGANGSNW KPSNWKTRIC NKWEMVEYCP  180
FGSPEQAGVL SKIPIDTVVS PPRADMLLLG VPAQRSFGFF QSKGQRLIQN LKQLDKISM
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_026662272.11e-116zinc finger CCCH domain-containing protein 56-like
SwissprotQ84UQ31e-58C3H56_ORYSJ; Zinc finger CCCH domain-containing protein 56
TrEMBLA0A3Q0IA871e-114A0A3Q0IA87_PHODC; zinc finger CCCH domain-containing protein 56-like
STRINGXP_008799391.14e-75(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP66153853
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32360.12e-44C3H family protein