PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s837821g002
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family MYB_related
Protein Properties Length: 164aa    MW: 18505.1 Da    PI: 9.3665
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s837821g002genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding29.12.2e-0915382347
                       -HHHHHHHHTTTS-HHHHHHHHHHH CS
    Myb_DNA-binding 23 tWktIartmgkgRtlkqcksrwqky 47
                       +W++Ia +++ gRt++++k++w+++
  PDK_30s837821g002 15 RWSLIAGRLP-GRTDNEIKNYWNTH 38
                       6*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.597143IPR017930Myb domain
SuperFamilySSF466891.56E-81247IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.605.3E-131440IPR009057Homeodomain-like
CDDcd001679.40E-71539No hitNo description
PfamPF002493.4E-71538IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 164 aa     Download sequence    Send to blast
MQCLSGTRGY IKHSRWSLIA GRLPGRTDNE IKNYWNTHIR RKLLSRGIDP ATHGPVHAPL  60
SDFTITFAKA EKKDVRILRR DEGKTGSSCS REEESASWRQ YRCPDLNLEL SISPPFQQPA  120
QPIEGERRLC FACSLGLHKS QECKCNGFLG LSAGALDYRA VDMK
Functional Description ? help Back to Top
Source Description
UniProtPossible transcription activator in response to an external signal. May be involved in the regulation of flavonoid biosynthesis.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008788440.11e-106myb-related protein Hv1-like
SwissprotP200263e-41MYB1_HORVU; Myb-related protein Hv1
TrEMBLA0A2H3XT681e-105A0A2H3XT68_PHODC; myb-related protein Hv1-like
STRINGXP_008788440.11e-105(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP11637448
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G34990.18e-31myb domain protein 32