PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s840231g002
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family bHLH
Protein Properties Length: 565aa    MW: 62598.6 Da    PI: 5.0497
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s840231g002genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.87.1e-12321364755
                        HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                HLH   7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         +Er+RR+++N+++ +Lr l+Pk      +K++ a+iL  A++Y+ +Lq
  PDK_30s840231g002 321 VAERKRRKKLNDRLLTLRALVPKI-----TKMDRASILGDAIQYVMELQ 364
                        68*********************7.....7****************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000835.74E-13311368No hitNo description
PROSITE profilePS5088815.11314363IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474596.94E-17317380IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.6E-15320369IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.4E-9321364IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.2E-16321379IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009555Biological Processpollen development
GO:0048657Biological Processanther wall tapetum cell differentiation
GO:0005634Cellular Componentnucleus
GO:0000978Molecular FunctionRNA polymerase II core promoter proximal region sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 565 aa     Download sequence    Send to blast
MSVGLPKLGT RTENGHIPDT FRHGDWRHRV IGRGDMKAWP QSTMAEGLRP LVGTNGWDYC  60
ILWKLSQDQR LRAQALITND PIWQTKLPDS TISHETVREK TMALVPVPGG LVELFASKHM  120
AEEQQTVEFV MSQCTGIPYE QAEAMNMVNN SGDPIDPQQD QNSNLATSAD GLQPWIPPQS  180
MAVDPPNLPW DPSDQSRLYD SPLNLFSGPK NSDIFFDGST ADSYLSNKPP PAPLGSTIES  240
SVAADMATAF RQSYVTSAHN LHSVTESSVS REVAGHEKES IKMDAARRAD SGSEGSDQVD  300
EDEEHRVAGR SGKRHHSKNL VAERKRRKKL NDRLLTLRAL VPKITKMDRA SILGDAIQYV  360
MELQKQVKDL QDELEETNPE DDDGKQNGSN NNSNSQMEVP NQHGMMNQGL EHDDCPNGSR  420
MIAMNNSNPM EQSQDLGHDD KGNQMEPQVE VRQVEGNEFF LKVLCEYKQG GFARLMEAMS  480
SLGLEVTNAN VTQFRTLVLN VFRVERRDNE VVQAEQGGRS LDRGRPTVVA TITTTTITTA  540
TIATSTTNST PTTTFTTITI SHDSK
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1322329ERKRRKKL
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008811619.10.0transcription factor ABORTED MICROSPORES
TrEMBLA0A2H3ZCV50.0A0A2H3ZCV5_PHODC; transcription factor ABORTED MICROSPORES
STRINGXP_008811619.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP55303449
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G16910.15e-53bHLH family protein