PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PDK_30s841271g002

Organism

Phoenix dactylifera

Taxonomic ID

42345

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix

Family

bHLH

Protein Properties

Length: 365aa MW: 40599.7 Da PI: 8.7264

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PDK_30s841271g002	genome	PDK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	15	4.6e-05	170	209	12	55
HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 RR++i +++ L+ l+P + +k Ka +L + v+Y++sLq PDK_30s841271g002 170 RREKISERMKMLQGLVPGC----DKVTGKALVLDEIVNYVQSLQ 209 9***************9....555***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	10.607	158	208	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	0.0063	169	214	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	3.01E-11	169	226	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	9.37E-6	170	213	No hit	No description
Gene3D	G3DSA:4.10.280.10	1.3E-12	171	221	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 365 aa Download sequence Send to blast
MEAFSYYPFL LDSPILASIP FETHLSTRQV GETSNNSSSC FPYYYSPEAI LEVSSGDTSA 60 YESSISLATA TKAPLVECQI PLSSAVIKPH DEKVPKQQGS MEKKRKNGDE ARSSYGQSSL 120 RTASTKESKS RKQRKPIGEL KGKRGKKPKC DDWKAAKAGE EPPEGYIHVR REKISERMKM 180 LQGLVPGCDK VTGKALVLDE IVNYVQSLQN QIEKMKSIQQ QVPLVNQTTH IHPPAFGNAR 240 NNYQMMDPSV PLLLHCQGST AFPQSSTIYE HFSVVRQRAF YSHVTHRRKE IAEGSTRDKL 300 RSTRDRQWST LSENSENGFF CFPAGVDSRI FEVDSTKVRV DSSIEGVDSL GVSGNEPSVV 360 PGESI

Sequence ? help Back to Top

Protein Sequence Length: 365 aa Download sequence Send to blast

MEAFSYYPFL LDSPILASIP FETHLSTRQV GETSNNSSSC FPYYYSPEAI LEVSSGDTSA  60
YESSISLATA TKAPLVECQI PLSSAVIKPH DEKVPKQQGS MEKKRKNGDE ARSSYGQSSL  120
RTASTKESKS RKQRKPIGEL KGKRGKKPKC DDWKAAKAGE EPPEGYIHVR REKISERMKM  180
LQGLVPGCDK VTGKALVLDE IVNYVQSLQN QIEKMKSIQQ QVPLVNQTTH IHPPAFGNAR  240
NNYQMMDPSV PLLLHCQGST AFPQSSTIYE HFSVVRQRAF YSHVTHRRKE IAEGSTRDKL  300
RSTRDRQWST LSENSENGFF CFPAGVDSRI FEVDSTKVRV DSSIEGVDSL GVSGNEPSVV  360
PGESI

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017702467.1	1e-149	transcription factor bHLH78-like
TrEMBL	A0A2H4A186	1e-148	A0A2H4A186_PHODC; transcription factor bHLH78-like
STRING	XP_008775143.1	1e-148	(Phoenix dactylifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G50915.2	3e-24	bHLH family protein