PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s841991g001
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family ARF
Protein Properties Length: 916aa    MW: 101936 Da    PI: 7.0272
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s841991g001genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B377.41.5e-24127228199
                        EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS
                 B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld 85 
                        f+k+lt sd++++g +++p++ ae+        +++++  ++l+ +d++g++W++++i+r++++r++lt+GW+ Fv+a++L +gD+v+F   
  PDK_30s841991g001 127 FCKTLTASDTSTHGGFSVPRRAAEKVfppldfsQQPPA--QELIARDLHGNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLIAGDSVLFI-- 214
                        99*****************************8544444..48************************************************.. PP

                        SSSEE..EEEEE-S CS
                 B3  86 grsefelvvkvfrk 99 
                        ++++ +l+++++r+
  PDK_30s841991g001 215 WNENNQLLLGIRRA 228
                        7888889****997 PP
2Auxin_resp120.51.3e-39253336183
         Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                        aahaa+t+s F+++YnPras+seFv+++++++ka++ ++vsvGmRf+m fete+ss rr++Gt++g+sdldpvrWpnS+Wrs+k
  PDK_30s841991g001 253 AAHAAATNSRFTIFYNPRASPSEFVIPLAQYVKAVYhTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDPVRWPNSHWRSVK 336
                        79*********************************9789******************************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019364.58E-49112256IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.6E-42120242IPR015300DNA-binding pseudobarrel domain
CDDcd100172.73E-22126227No hitNo description
PfamPF023626.6E-23127228IPR003340B3 DNA binding domain
PROSITE profilePS5086313.239127229IPR003340B3 DNA binding domain
SMARTSM010198.7E-26127229IPR003340B3 DNA binding domain
PfamPF065071.8E-34253336IPR010525Auxin response factor
SuperFamilySSF542771.83E-7776858No hitNo description
PfamPF023091.7E-7777868IPR033389AUX/IAA domain
PROSITE profilePS5174521.217783867IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009733Biological Processresponse to auxin
GO:0009908Biological Processflower development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 916 aa     Download sequence    Send to blast
MRPSSSGLAN QPQEEEQRCL NSELWHACAG PLVSLPVVGS RVIYFPQGHS EQVAASTNKE  60
IDSHIPNYPS LQPQLICQLH DVTMHADAET DEVYAQMTLQ PLSLQEQKEP YHPTELGTPS  120
KQPTNYFCKT LTASDTSTHG GFSVPRRAAE KVFPPLDFSQ QPPAQELIAR DLHGNEWKFR  180
HIFRGQPKRH LLTTGWSVFV SAKRLIAGDS VLFIWNENNQ LLLGIRRANR PQTVMPSSVL  240
SSDSMHIGLL AAAAHAAATN SRFTIFYNPR ASPSEFVIPL AQYVKAVYHT RVSVGMRFRM  300
LFETEESSVR RYMGTITGIS DLDPVRWPNS HWRSVKVGWD ESTAGERQPR VSLWEIEPLT  360
TFPMYPTPFP LRLKRPWPTG LPSLHGGKDD DLDLSSPLRW LRDGGNPGVQ SLNFQGIGVT  420
PWLQPRLDAS VLGLQPDMYQ SMAAAALQEI RTVDPTKQVS PTILPFQQPQ VTSRSSHLLP  480
SQILQQAQPQ SQQNFHHTIQ DNQVPSQTQS QFLQHQLQHC NSFGEQKQHQ QIQQHQIPQQ  540
QQHLQIQQQQ QRQQMQQQKH LSDHQQIPNV VSALSQFSSA SHSQSPLQKN SSFSQRQNLP  600
DSNGNSVSTS SAFPLHNILR PFSPEDTPLS LPRTTPLIAS SPWPSKRVAV ESILPSGAQC  660
VVPRVEQLGA TQPNTSPHSV TLAPFPGREC SVDHGNMDPQ NNLLFGVNID SSSLLVQNGM  720
PSLRTVVSES DSAAMPYAAC NFLSPSGTDF PLNQALTSSS CLDKSGFLHY SPENMDHVNP  780
RSGTFVKVYK SGSLGRLLDI TKFSSYHELR SELGRLFGLE GQLEDPVRSG WQLVFVDREN  840
DALLVGDDPW QEFVNTVYCI KILAPQEVQQ MGKQGVDLLN SAPIKRLPSN SCDGYGSRQD  900
SRNLSAGITS VGSLDY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-1582035751388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008777704.10.0auxin response factor 17-like
RefseqXP_026657097.10.0auxin response factor 17-like
SwissprotQ653U30.0ARFQ_ORYSJ; Auxin response factor 17
TrEMBLA0A2H3X3E60.0A0A2H3X3E6_PHODC; Auxin response factor
STRINGXP_008777704.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20123685
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30330.10.0auxin response factor 6
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]