PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s845411g004
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family GRAS
Protein Properties Length: 585aa    MW: 64351.1 Da    PI: 6.0023
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s845411g004genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS119.93.2e-373754901122
               GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilk 92 
                        lv+lLl+cAeav+++d  +a+++L +l+  +sp gd+mqR+a++f+ ALaar++   s  +++ +p+      + ++l++++++++++P++k
  PDK_30s845411g004 375 LVHLLLACAEAVAKDDYLAARRYLHHLNSVVSPLGDSMQRVASCFADALAARISP--SPSSSSPRPWF----PTLDTLKIYQILYQACPYIK 460
                        68****************************************************9..22333333333....3699**************** PP

               GRAS  93 fshltaNqaIleavegeervHiiDfdisqG 122
                        f+h+taNqaI ea+e+e+rvH++D+di q 
  PDK_30s845411g004 461 FAHFTANQAIFEAFESEDRVHVVDLDIVQA 490
                        ***************************986 PP
2GRAS103.62.8e-32491584281374
               GRAS 281 erikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSa 372
                        +r+kvE+ ++++ei+n+va egaer++rhe+l++Wr+ +e  GFk v+ls + ++q + ll  ++ dgyr+ e++g+l+lgW+dr+++++Sa
  PDK_30s845411g004 491 ARAKVEQYIFAPEIKNIVASEGAERVARHERLGRWRKVMEGRGFKGVALSANSVNQSRILLGLYACDGYRLTEDNGCLLLGWQDRAIIAASA 582
                        799***************************************************************************************** PP

               GRAS 373 Wr 374
                        Wr
  PDK_30s845411g004 583 WR 584
                        *8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098523.126349585IPR005202Transcription factor GRAS
PfamPF035141.1E-34375490IPR005202Transcription factor GRAS
PfamPF035149.6E-30491584IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 585 aa     Download sequence    Send to blast
MGSLKSNGIS STNQQLSSPT ASVSESNAVA SFEPETNNQT TFQGLKYDVD IDVEIQSPDI  60
SLWESLFADQ IDSGTDFMIS SPRRDFMVFS PRRDYMISPK RDYMISSPKR DYMVSSPKRD  120
CLISSPKREY MSSPPRRDSI VSSPKIDYMV SSPKREYMVS SPRRTGISSI YSTHHSSNGY  180
VHGMHGLYGC ASPPYNSSNH SKGKSQSPLH KVFNSFSSPY SSSTQFAHGE CLALPAMDAF  240
LDEYGRENYS TYTSSLNGTG GIECSSEPLE MPPTTTLPSL LDCLTMESRY GDGVGEKMAA  300
GLQISGEGDL YQMSQFGVGG AAQQQGQQQQ GRDIDHGLLG SVSKTELVES SYHGLLSGPI  360
IPSESEQEQD SGLQLVHLLL ACAEAVAKDD YLAARRYLHH LNSVVSPLGD SMQRVASCFA  420
DALAARISPS PSSSSPRPWF PTLDTLKIYQ ILYQACPYIK FAHFTANQAI FEAFESEDRV  480
HVVDLDIVQA ARAKVEQYIF APEIKNIVAS EGAERVARHE RLGRWRKVME GRGFKGVALS  540
ANSVNQSRIL LGLYACDGYR LTEDNGCLLL GWQDRAIIAA SAWRC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A1e-213585831377Protein SCARECROW
5b3h_D1e-213585831377Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that functions in mycorrhizal specific signaling (PubMed:23122845). Required for Myc factor signaling from mycorrhizal fungi, but has no function in Nod factor signaling from rhizobial bacteria (PubMed:23122845). Regulates the expression of RAM2, a glycerol-3-phosphate acyl transferase that promotes cutin biosynthesis to enhance mycorrhizal hyphopodia formation (PubMed:23122845). {ECO:0000269|PubMed:23122845}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced in roots during colonization by arbuscular mycorrhizal fungi. {ECO:0000269|PubMed:23122845}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1363771e-46AC136377.4 Oryza sativa Japonica Group chromosome 11 clone OSJNBa0028G07, complete sequence.
GenBankAC1377591e-46AC137759.4 Oryza sativa Japonica Group chromosome 11 clone OSJNBb0008H02, complete sequence.
GenBankAP0149671e-46AP014967.1 Oryza sativa Japonica Group DNA, chromosome 11, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_026660807.10.0DELLA protein RGL1-like
SwissprotG7L1664e-72RAM1_MEDTR; GRAS family protein RAM1
TrEMBLA0A3Q0I5S50.0A0A3Q0I5S5_PHODC; DELLA protein RGL1-like
STRINGXP_008791129.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP92213141
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14920.14e-23GRAS family protein
Publications ? help Back to Top
  1. Tang H, et al.
    An improved genome release (version Mt4.0) for the model legume Medicago truncatula.
    BMC Genomics, 2014. 15: p. 312
    [PMID:24767513]
  2. Pecrix Y, et al.
    Whole-genome landscape of Medicago truncatula symbiotic genes.
    Nat Plants, 2018. 4(12): p. 1017-1025
    [PMID:30397259]