PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PDK_30s846221g001

Organism

Phoenix dactylifera

Taxonomic ID

42345

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix

Family

bHLH

Protein Properties

Length: 234aa MW: 25824 Da PI: 7.3125

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PDK_30s846221g001	genome	PDK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	26.2	1.5e-08	127	174	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR+riN+++ L++l+P + k + a +L + ++Y++sLq PDK_30s846221g001 127 SHSLAERVRRERINEKMRCLQDLVPGC----YKAMGMAGMLDEIINYVQSLQ 174 8*************************8....355999999999999999998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	2.36E-16	121	188	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	8.35E-11	121	178	No hit	No description
PROSITE profile	PS50888	15.65	123	173	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.9E-16	123	184	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	7.6E-6	127	174	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	4.5E-9	129	179	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 234 aa Download sequence Send to blast
MENSSVGLMG FPSENYLSHQ PEFSMPFADN LSCFLPLECA KPVTVSQPVT SNGEQSPGDG 60 KRKAKAAPET SSANSSEPPT ESCLRDDKSK RKTGSGSVKR RRSNSKEVVK PKEVVHVRAR 120 RGQATDSHSL AERVRRERIN EKMRCLQDLV PGCYKAMGMA GMLDEIINYV QSLQNQVEFL 180 SMKLSAASSF YDCSLDLEPM ATPQVGDACE AQDVERARTE AYGWCTSFHS TNPF

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008797805.1	1e-174	transcription factor bHLH75-like isoform X1
Swissprot	A4D998	5e-53	BH075_ARATH; Transcription factor bHLH75
TrEMBL	A0A2H3YEZ1	1e-173	A0A2H3YEZ1_PHODC; transcription factor bHLH75-like isoform X1
STRING	XP_008797805.1	1e-174	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP15639	6	15

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G25330.1	3e-48	bHLH family protein

Publications ? help Back to Top
Khan M, et al. Interplay between phosphorylation and SUMOylation events determines CESTA protein fate in brassinosteroid signalling. Nat Commun, 2014. 5: p. 4687 [PMID:25134617] Eremina M, et al. Brassinosteroids participate in the control of basal and acquired freezing tolerance of plants. Proc. Natl. Acad. Sci. U.S.A., 2016. 113(40): p. E5982-E5991 [PMID:27655893] Pfannebecker KC,Lange M,Rupp O,Becker A Seed Plant-Specific Gene Lineages Involved in Carpel Development. Mol. Biol. Evol., 2017. 34(4): p. 925-942 [PMID:28087776]