PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s848611g002
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family MYB_related
Protein Properties Length: 311aa    MW: 33361.6 Da    PI: 4.8666
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s848611g002genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding28.43.7e-091039231
                       SSS-HHHHHHHHHHHHHTTTT-HHHHHHHH CS
    Myb_DNA-binding  2 grWTteEdellvdavkqlGggtWktIartm 31
                         W t+E++ll++av+++G+++W+++a + 
  PDK_30s848611g002 10 EIWGTWEELLLACAVNRHGTRSWDSVAMEA 39
                       56************************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF002499.6E-81240IPR001005SANT/Myb domain
CDDcd001670.002791238No hitNo description
SMARTSM002972.6E-10178288IPR001487Bromodomain
SuperFamilySSF473706.93E-15184286IPR001487Bromodomain
Gene3DG3DSA:1.20.920.104.9E-14185305IPR001487Bromodomain
CDDcd043691.45E-14189283No hitNo description
PfamPF004391.2E-8196272IPR001487Bromodomain
PROSITE profilePS5001410.663197269IPR001487Bromodomain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 311 aa     Download sequence    Send to blast
MARSGDPERE IWGTWEELLL ACAVNRHGTR SWDSVAMEAN LFCGVGWESD GFGFTRSLEL  60
KLKKLKEERE RSLRETESGE REEDPKDDGK KVGGSPGSTP GSFSGDRISG GDSGGSSNES  120
NSKNPKDEGK PGGEDGKPEE NPGSSGGEAD PTAGRGEKAA GEGSSGGDEQ EADEDSVIAK  180
RIVAESQPLA SFLEIIRSHK YGSVFEHRLE SQESGEYRSV IRQHVDLAMV RAKLERGVGR  240
ACTGVEFFRD LLLLFNNAIV FYPKDSSEST AAVHLRQLVA KEMAATIRKL ARTPSPAAAS  300
AASPSAEASR N
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008812296.11e-86uncharacterized protein LOC103723225
TrEMBLA0A2H3ZDS42e-85A0A2H3ZDS4_PHODC; uncharacterized protein LOC103723225
STRINGXP_008812296.14e-86(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP31812648
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60110.18e-29DNA-binding bromodomain-containing protein