PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s849681g002
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family WRKY
Protein Properties Length: 291aa    MW: 32066.7 Da    PI: 7.9891
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s849681g002genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY92.33.6e-2985141259
                        --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
               WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                        +DgynWrKYGqK+vk+s+  rsYY+Ct ++C +kkkve++  d+++vei+Y+g+Hnh+
  PDK_30s849681g002  85 SDGYNWRKYGQKQVKSSDSFRSYYKCTNTNCLAKKKVEHCP-DGRIVEIIYRGQHNHD 141
                        7****************************************.***************7 PP
2WRKY33.58.1e-11256277223
                        --SS-EEEEEEE--TT-SS-EE CS
               WRKY   2 dDgynWrKYGqKevkgsefprs 23 
                        +Dgy+WrKYGqK vkg+++pr+
  PDK_30s849681g002 256 SDGYRWRKYGQKIVKGNPNPRK 277
                        6*******************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.805.5E-2677143IPR003657WRKY domain
PROSITE profilePS5081121.16179143IPR003657WRKY domain
SuperFamilySSF1182901.44E-2381143IPR003657WRKY domain
SMARTSM007742.5E-3084142IPR003657WRKY domain
PfamPF031063.0E-2286141IPR003657WRKY domain
Gene3DG3DSA:2.20.25.802.4E-11240277IPR003657WRKY domain
SuperFamilySSF1182902.62E-8248276IPR003657WRKY domain
PROSITE profilePS5081113.402250276IPR003657WRKY domain
SMARTSM007740.003255287IPR003657WRKY domain
PfamPF031065.0E-7257277IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 291 aa     Download sequence    Send to blast
MTHQAALATV TAQAQMQLQA AYPSSSSELA STSVSQPMLS TISPVPLQQR PSAVPEDSVC  60
TPETEQLPSV QKPQSAHVVV KTTTSDGYNW RKYGQKQVKS SDSFRSYYKC TNTNCLAKKK  120
VEHCPDGRIV EIIYRGQHNH DPPQKPRYSK ERGAQSGGTT GENESLELPS SELNESEPST  180
CKPEQISGNE TPAQQLYCSS DCEGDAGIKT EEGIGEEPDP KRRLSESTMN FSTPVLRTVR  240
EPKIVVQTAC DVGHGSDGYR WRKYGQKIVK GNPNPRKNES KKFLLSLFSN I
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A2e-12861431977Probable WRKY transcription factor 4
2lex_A2e-12861431977Probable WRKY transcription factor 4
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008778954.10.0probable WRKY transcription factor 4
TrEMBLA0A2H3X6590.0A0A2H3X659_PHODC; probable WRKY transcription factor 4
STRINGXP_008778954.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP58203455
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G03340.11e-47WRKY DNA-binding protein 3