PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PDK_30s850271g001

Organism

Phoenix dactylifera

Taxonomic ID

42345

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix

Family

G2-like

Protein Properties

Length: 459aa MW: 50226.6 Da PI: 5.425

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PDK_30s850271g001	genome	PDK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	40.8	5e-13	96	124	26	54
G2-like 26 kAtPktilelmkvkgLtlehvkSHLQkYR 54 +AtPk+i+++m+vkgLtl+h+kSHLQ R PDK_30s850271g001 96 EATPKAIMKTMGVKGLTLYHLKSHLQVQR 124 6*************************877 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	3.0E-11	94	124	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	7.4E-8	94	125	IPR006447	Myb domain, plants
Pfam	PF14379	6.1E-12	115	146	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain
Pfam	PF14379	1.7E-24	263	306	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 459 aa Download sequence Send to blast
MWSSLMRAKY GDLVPGEGGA RQGLELRAAW EGLFYARRVL GVEWVFLEGD SSMVIDWIQG 60 ADRFVILVLD LIRYHSITVV VRYGTARCTE YRYGTEATPK AIMKTMGVKG LTLYHLKSHL 120 QVQRHLQIRI EAQGKYLHSM LERACNALID PNLGLIGLAS IRCDLPELPN IETDDCLGHP 180 HVSLKLPSLS EIAAACMEEK SLNRAMAQIA ECSVDSCLTS TESPGRAPVL GSQAAALRKG 240 SCPLLGTDES HAWDGDFLCS GCNEAMRVQM ELQRRLHEQL EVQRHLQIRI EAQGKYLHSM 300 LERACNALID PNLGLIGLAS IRCDLPELPN IETDDCLGHP HVSLKLPSLS EIAAACMEEK 360 SNIETDDCLG HPHVSLKLPS LSEIAAACME EKSLNRAMAQ IAECSVDSCL TSTESPGRAP 420 VLGSQAAALR KGSCPLLGTD ESHAWDGDVH EDGQWVSSI

Sequence ? help Back to Top

Protein Sequence Length: 459 aa Download sequence Send to blast

MWSSLMRAKY GDLVPGEGGA RQGLELRAAW EGLFYARRVL GVEWVFLEGD SSMVIDWIQG  60
ADRFVILVLD LIRYHSITVV VRYGTARCTE YRYGTEATPK AIMKTMGVKG LTLYHLKSHL  120
QVQRHLQIRI EAQGKYLHSM LERACNALID PNLGLIGLAS IRCDLPELPN IETDDCLGHP  180
HVSLKLPSLS EIAAACMEEK SLNRAMAQIA ECSVDSCLTS TESPGRAPVL GSQAAALRKG  240
SCPLLGTDES HAWDGDFLCS GCNEAMRVQM ELQRRLHEQL EVQRHLQIRI EAQGKYLHSM  300
LERACNALID PNLGLIGLAS IRCDLPELPN IETDDCLGHP HVSLKLPSLS EIAAACMEEK  360
SNIETDDCLG HPHVSLKLPS LSEIAAACME EKSLNRAMAQ IAECSVDSCL TSTESPGRAP  420
VLGSQAAALR KGSCPLLGTD ESHAWDGDVH EDGQWVSSI

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_026657368.1	1e-109	protein PHR1-LIKE 3-like, partial
TrEMBL	A0A3Q0HRP5	1e-107	A0A3Q0HRP5_PHODC; protein PHR1-LIKE 3-like
STRING	XP_008778612.1	1e-107	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP29411	4	4

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G13640.1	9e-24	G2-like family protein