PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s853851g003
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family LBD
Protein Properties Length: 163aa    MW: 18206.7 Da    PI: 6.4958
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s853851g003genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260139.51.2e-4361051100
             DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlka 92 
                        +Ca+Ck+lrr+C+kdC++ap fp+++p++fa+vh++FGasnv+k+l++lp ++r da++slvyeA+ar+rdPvyG+vg i+ lq +++ql+ 
  PDK_30s853851g003   6 PCASCKLLRRRCTKDCFFAPFFPSDDPHRFAIVHRVFGASNVSKMLQELPVHQRADAVRSLVYEADARMRDPVYGCVGAISYLQDKVSQLQM 97 
                        7******************************************************************************************* PP

             DUF260  93 elallkee 100
                        +la++++e
  PDK_30s853851g003  98 QLAAAQAE 105
                        ****9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089126.2285106IPR004883Lateral organ boundaries, LOB
PfamPF031954.5E-436103IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 163 aa     Download sequence    Send to blast
MGGSSPCASC KLLRRRCTKD CFFAPFFPSD DPHRFAIVHR VFGASNVSKM LQELPVHQRA  60
DAVRSLVYEA DARMRDPVYG CVGAISYLQD KVSQLQMQLA AAQAEILCIP MQQEPPEATD  120
QQREPDDKPY LTQNNLNGMP QLMNYGSSSN AAQEHLKGES LWT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A5e-4621077112LOB family transfactor Ramosa2.1
5ly0_B5e-4621077112LOB family transfactor Ramosa2.1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008808032.11e-121LOB domain-containing protein 12-like
SwissprotQ8LBW33e-69LBD12_ARATH; LOB domain-containing protein 12
TrEMBLA0A2H3Z4N51e-119A0A2H3Z4N5_PHODC; LOB domain-containing protein 12-like
STRINGXP_008808032.11e-120(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP88238150
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G30130.12e-63LBD family protein
Publications ? help Back to Top
  1. Penfield S, et al.
    Reserve mobilization in the Arabidopsis endosperm fuels hypocotyl elongation in the dark, is independent of abscisic acid, and requires PHOSPHOENOLPYRUVATE CARBOXYKINASE1.
    Plant Cell, 2004. 16(10): p. 2705-18
    [PMID:15367715]