PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s860691g001
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family M-type_MADS
Protein Properties Length: 234aa    MW: 26847.4 Da    PI: 9.1243
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s860691g001genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF54.61.4e-171152344
                       --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTS CS
             SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstg 44
                       i n+s r  t+ kRr+g+ KK +ELS+LCd++++++++s++ 
  PDK_30s860691g001 11 IANDSHRRATLKKRRKGLVKKVSELSTLCDVKACLVVYSPQE 52
                       89*************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006617.423154IPR002100Transcription factor, MADS-box
SMARTSM004326.1E-23160IPR002100Transcription factor, MADS-box
CDDcd002662.69E-31285No hitNo description
SuperFamilySSF554551.31E-23395IPR002100Transcription factor, MADS-box
PRINTSPR004042.7E-10323IPR002100Transcription factor, MADS-box
PfamPF003196.0E-171151IPR002100Transcription factor, MADS-box
PRINTSPR004042.7E-102338IPR002100Transcription factor, MADS-box
PRINTSPR004042.7E-103859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0043078Cellular Componentpolar nucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 234 aa     Download sequence    Send to blast
MARKKVNLAW IANDSHRRAT LKKRRKGLVK KVSELSTLCD VKACLVVYSP QEPLPVVWPS  60
VPEATQVVAR FRSMPEMEQS KKMMDQEGFL LQRVTKLQDQ VRRQERENRE LETTLLMYEG  120
LAGRSLHNAG MQDVTSLAWM VEMKMKMVHE RIEMLSAQMA SQRVEASSQV VLAAPVMKEK  180
TPMEAAMEAL ERPSWFMDVM NPNDNMIYGG GAGMMQPYID HTNPWLDPCY LPFK
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1224RKKVNLAWIANDSHRRATLKKRR
22125KKRRK
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00553DAPTransfer from AT5G48670Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008778747.11e-175agamous-like MADS-box protein AGL80
TrEMBLA0A2H3X5Q11e-173A0A2H3X5Q1_PHODC; agamous-like MADS-box protein AGL80
STRINGXP_008778747.11e-174(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP36336202
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48670.11e-36AGAMOUS-like 80