PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s861241g006
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family ERF
Protein Properties Length: 232aa    MW: 26311.6 Da    PI: 10.0552
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s861241g006genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP237.56.1e-12107150151
                AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaark 51 
                        +  +GV++  k+ +W A I++      +k+++lg+ g+ eeAa+++++a+ 
  PDK_30s861241g006 107 CVMRGVYF--KNMKWQAAIKVD-----KKQIHLGTVGSQEEAARLYDRAAF 150
                        568***99..47*********4.....5********************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS510328.62384164IPR001471AP2/ERF domain
PfamPF008473.5E-6107151IPR001471AP2/ERF domain
SuperFamilySSF541714.71E-8108153IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.103.9E-6110154IPR001471AP2/ERF domain
SMARTSM003802.1E-4110165IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 232 aa     Download sequence    Send to blast
MVSIRRRRYL GLCTGKSSIP VELPKPAAIG NTVENSNQNV KPFSVHPMPS DNLSLQMPIN  60
VSEALPGSSN ASGSSSSKEE VNHYYPGKQI KRRKRHRRKH FEDQEPCVMR GVYFKNMKWQ  120
AAIKVDKKQI HLGTVGSQEE AARLYDRAAF MCGREPNFEL LEEEKQELRQ YKWEDFLAVT  180
RNAINNKKHQ KRLGADRRKK PESQLQSNDG EREKGTHASS ASDDGDADTS VS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1186200KKHQKRLGADRRKKP
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008803500.11e-175ethylene-responsive transcription factor-like protein At4g13040 isoform X3
RefseqXP_008803501.11e-175ethylene-responsive transcription factor-like protein At4g13040 isoform X3
TrEMBLA0A2H3YT591e-174A0A2H3YT59_PHODC; ethylene-responsive transcription factor-like protein At4g13040 isoform X3
STRINGXP_008803499.11e-174(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP75163545
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G13040.24e-42ERF family protein