PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PDK_30s863771g001

Organism

Phoenix dactylifera

Taxonomic ID

42345

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix

Family

C2H2

Protein Properties

Length: 208aa MW: 23920.1 Da PI: 10.1719

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PDK_30s863771g001	genome	PDK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	18.8	4.6e-06	79	101	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H PDK_30s863771g001 79 FVCEICNKGFQRDQNLQLHRRGH 101 89*******************88 PP
2	zf-C2H2	13	0.00031	156	178	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC C+k++ +s+ k H +t+ PDK_30s863771g001 156 WKCDRCSKTYAVHSDWKAHVKTC 178 58*******************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	6.8E-8	78	101	No hit	No description
Gene3D	G3DSA:3.30.160.60	5.3E-6	78	101	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
Pfam	PF12171	2.6E-5	79	101	IPR022755	Zinc finger, double-stranded RNA binding
SMART	SM00355	0.017	79	101	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	10.949	79	101	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	81	101	IPR007087	Zinc finger, C2H2
SMART	SM00355	91	121	151	IPR015880	Zinc finger, C2H2-like
Gene3D	G3DSA:3.30.160.60	1.9E-5	144	177	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	6.8E-8	151	176	No hit	No description
SMART	SM00355	70	156	183	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 208 aa Download sequence Send to blast
MSNSTSISEE ASVSSETRAH DFNKSLSSPL TPISPPHYQQ QQQEPQPKSQ KKRSQPGNPD 60 PDAEVIALSP KTLMATNRFV CEICNKGFQR DQNLQLHRRG HNLPWKLRRR SSKEGMRKRV 120 YVCPEPTCVH HHPSRALGDL TGIKKHYSRK HGEKKWKCDR CSKTYAVHSD WKAHVKTCGT 180 REHRCDCGTL FSRLVISFMF YDSNSFTI

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_C	3e-20	152	193	3	44	Zinc finger protein JACKDAW
5b3h_F	3e-20	152	193	3	44	Zinc finger protein JACKDAW
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000305}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008788632.1	1e-143	protein indeterminate-domain 7-like
Swissprot	Q8H1F5	1e-95	IDD7_ARATH; Protein indeterminate-domain 7
TrEMBL	A0A2H3XTV1	1e-141	A0A2H3XTV1_PHODC; protein indeterminate-domain 7-like
STRING	XP_008788632.1	1e-142	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP202	38	320

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G55110.1	5e-88	indeterminate(ID)-domain 7

Publications ? help Back to Top
Moreno-Risueno MA, et al. Transcriptional control of tissue formation throughout root development. Science, 2015. 350(6259): p. 426-30 [PMID:26494755]