PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s867521g002
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family TALE
Protein Properties Length: 354aa    MW: 40022.1 Da    PI: 8.0849
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s867521g002genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox26.69.9e-092763141854
                        HHHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
           Homeobox  18 lFek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                        +F++  ++yp+ +e+  LA k gLt +qV++WF N R +
  PDK_30s867521g002 276 MFQNflHPYPKDNEKHLLAIKSGLTRSQVSNWFINARVR 314
                        5887779******************************88 PP
2BELL75.86.6e-25149217472
               BELL   4 elqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                        e  +kk+ L+++l+ Vd+rY+q+++q++ v+s+F  ++g g++++++ +Al++iS  +++L+ +i++q+
  PDK_30s867521g002 149 EAYIKKTELITMLQLVDQRYNQCMDQIHDVVSAFCSATGSGTSHMHAWFALRTISSLYKNLRKRITGQL 217
                        6779**************************************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005749.7E-2176215IPR006563POX domain
PfamPF075264.4E-3081214IPR006563POX domain
PROSITE profilePS5007111.353255318IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.602.2E-26257331IPR009057Homeodomain-like
CDDcd000862.06E-10258319No hitNo description
SMARTSM003892.5E-5258322IPR001356Homeobox domain
SuperFamilySSF466891.07E-15258327IPR009057Homeodomain-like
PfamPF059201.2E-14275314IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008285Biological Processnegative regulation of cell proliferation
GO:0009640Biological Processphotomorphogenesis
GO:0010073Biological Processmeristem maintenance
GO:0010227Biological Processfloral organ abscission
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0010371Biological Processregulation of gibberellin biosynthetic process
GO:0090470Biological Processshoot organ boundary specification
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 354 aa     Download sequence    Send to blast
MSMPYAPDQC SEASCSGITP VTSNNSGYPV STELPACSHA FQNSSHDVGW ELGVRSGQSF  60
PNNEKFSLYK ISSSLVQFPH VLSGSRYLHV AQQILAEVVA YAVPDWNEMN SDSLAGIEGE  120
EKMPFSSGWS NIQDFAISGS DEYPLSCREA YIKKTELITM LQLVDQRYNQ CMDQIHDVVS  180
AFCSATGSGT SHMHAWFALR TISSLYKNLR KRITGQLLLI TQQPGTECMR EKEKSFESSL  240
IQKQWALQQL RRRDQHSWRP QRGLPEKSVS VLRAWMFQNF LHPYPKDNEK HLLAIKSGLT  300
RSQVSNWFIN ARVRLWKPMI EEMHSELSKK SQTDGSGGES RSHGNIGSQR FQTT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3k2a_A7e-15264322563Homeobox protein Meis2
3k2a_B7e-15264322563Homeobox protein Meis2
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor which may be involved in the signal transduction pathway downstream of the COP1 gene. Controls floral competency as a specific activator of FLC expression. Is responsive of the nuclear import of SHOOT MERISTEMLESS (STM). {ECO:0000269|PubMed:17908157}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By light. In etiolated seedlings, maximally expressed after 3 days of illumination.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010915332.10.0BEL1-like homeodomain protein 3 isoform X1
RefseqXP_010915334.10.0BEL1-like homeodomain protein 3 isoform X1
RefseqXP_010915335.10.0BEL1-like homeodomain protein 3 isoform X1
RefseqXP_019705052.10.0BEL1-like homeodomain protein 3 isoform X2
RefseqXP_029119027.10.0BEL1-like homeodomain protein 3 isoform X1
SwissprotP487319e-80ATH1_ARATH; Homeobox protein ATH1
TrEMBLA0A2H4A0470.0A0A2H4A047_PHODC; homeobox protein ATH1-like
STRINGXP_008811733.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP31433365
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32980.14e-82homeobox gene 1
Publications ? help Back to Top
  1. Khan M, et al.
    Repression of Lateral Organ Boundary Genes by PENNYWISE and POUND-FOOLISH Is Essential for Meristem Maintenance and Flowering in Arabidopsis.
    Plant Physiol., 2015. 169(3): p. 2166-86
    [PMID:26417006]