PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s868141g001
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family ERF
Protein Properties Length: 157aa    MW: 17690 Da    PI: 7.6679
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s868141g001genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2347.5e-111463155
                AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                       ++ykGVr++k +g++v+eIr+p   g +  r +l  f t  e a a++ a   l+g
  PDK_30s868141g001 14 KKYKGVRRRK-WGKYVSEIRVP---G-ShERLWLRPFTT-PEPAVARDTAVYFLRG 63
                       59*****998.**********8...4.35**********.6666666666666665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.85E-151474No hitNo description
SMARTSM003809.9E-131579IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.4E-181574IPR001471AP2/ERF domain
SuperFamilySSF541719.81E-121574IPR016177DNA-binding domain
PROSITE profilePS5103214.8681573IPR001471AP2/ERF domain
PRINTSPR003678.5E-51627IPR001471AP2/ERF domain
PRINTSPR003678.5E-53854IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 157 aa     Download sequence    Send to blast
MSRSQEGIVS AGEKKYKGVR RRKWGKYVSE IRVPGSHERL WLRPFTTPEP AVARDTAVYF  60
LRGPDWSHDL NFPHRVAMYA WAGLSPRSIQ RVASDSGMAV DAQLMVRGPE APPQPPTQRA  120
EVGVMESINW RQGGEHGLYE VSEFGGDICI DDTDIYM
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11622KGVRRRK
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008778360.11e-108ethylene-responsive transcription factor ERF020-like
SwissprotQ9C9I82e-28ERF20_ARATH; Ethylene-responsive transcription factor ERF020
TrEMBLA0A2H3X4U91e-107A0A2H3X4U9_PHODC; ethylene-responsive transcription factor ERF020-like
STRINGXP_008778360.11e-108(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP64332951
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71520.11e-30ERF family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]