PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s868201g004
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family ARF
Protein Properties Length: 686aa    MW: 76210.9 Da    PI: 6.738
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s868201g004genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B370.32.6e-22128228198
                        EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS
                 B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld 85 
                        f+k+lt sd++++g +++ +++a+e+       ++++   ++l+ +d++g +W +++i+r++++r++lt+GW+ Fv++++L +gD ++F   
  PDK_30s868201g004 128 FCKTLTASDTSTHGGFSVLRRHADEClppldmsQHPP--WQELVAKDLHGTEWHFRHIFRGQPRRHLLTTGWSIFVSSKRLVAGDAFIFL-- 215
                        99*****************************654444..458************************************************.. PP

                        SSSEE..EEEEE- CS
                 B3  86 grsefelvvkvfr 98 
                        + +++el+v+v+r
  PDK_30s868201g004 216 RGENGELRVGVRR 228
                        449999*****97 PP
2Auxin_resp112.63.7e-37254336183
         Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                        a+ha+st++ F+v+Y+Pr+s+seF+++v+k+++a ++k+svGmRfkm+fe+++++er++sGt++gv d+ ++rW +S+WrsLk
  PDK_30s868201g004 254 ASHAISTGTLFSVFYKPRTSRSEFIISVNKYLEAKNHKLSVGMRFKMRFEGDEAPERSFSGTIIGVGDSTQSRWADSEWRSLK 336
                        789******************************************************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019365.49E-43119257IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.105.9E-40125243IPR015300DNA-binding pseudobarrel domain
CDDcd100172.99E-21126228No hitNo description
PfamPF023623.7E-20128228IPR003340B3 DNA binding domain
PROSITE profilePS5086311.166128230IPR003340B3 DNA binding domain
SMARTSM010193.2E-21128230IPR003340B3 DNA binding domain
PfamPF065076.1E-35254336IPR010525Auxin response factor
PfamPF023093.3E-6550593IPR033389AUX/IAA domain
PROSITE profilePS5174526.884557650IPR000270PB1 domain
SuperFamilySSF542771.81E-12560635No hitNo description
PfamPF023095.0E-7604647IPR033389AUX/IAA domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 686 aa     Download sequence    Send to blast
MALAPPRSSA GGLPCSGPSG DALYRELWHA CAGPLVTVPR ERERVYYFPQ GHMEQLEAST  60
NQGLDQHMPL FNLPSKILCR VVHVQLRAEP DTDEVYAQIT LLPEPDQSEI TSPDPPLPEL  120
ERCAVHSFCK TLTASDTSTH GGFSVLRRHA DECLPPLDMS QHPPWQELVA KDLHGTEWHF  180
RHIFRGQPRR HLLTTGWSIF VSSKRLVAGD AFIFLRGENG ELRVGVRRLM RQLNNMPSSV  240
ISSHSMHLGV LATASHAIST GTLFSVFYKP RTSRSEFIIS VNKYLEAKNH KLSVGMRFKM  300
RFEGDEAPER SFSGTIIGVG DSTQSRWADS EWRSLKVQWD EPSSIPRPDR VSPWELEPLV  360
ASTPQASHQT ARHKRARPLA STTIMPDISP AFGLWKSPVE STQTFSFSGL QRGRELYPSS  420
SLFSSTSKPV SIVFHGNTGP SAVTSRSEYW PVRADTQTES FSASVNREPC EKKQDTGTGC  480
RLFGIQLIEG SAVEETSLLA NVSAGIGEDQ PVTSVGADSD RHSQPSNINR SDAPAVSSEP  540
EKSCLRSPQE TQSRQLRSCT KVHMQGMAVG RAVDLTRLDG YDELLEKLEE MFNIKGELTG  600
AVKKWQVVYT DDEDDMMLVG DDPWHEFCSM VRKIYIYTYE EAKRLSPKAK LPVIGEAAKP  660
GSKKSSSDAD TPPNRPEEQV VAVKEC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A0.01735913355Auxin response factor 1
4ldw_A0.01735913355Auxin response factor 1
4ldw_B0.01735913355Auxin response factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008795276.10.0auxin response factor 7-like isoform X1
SwissprotQ6YVY00.0ARFG_ORYSJ; Auxin response factor 7
TrEMBLA0A2H3Y9290.0A0A2H3Y929_PHODC; Auxin response factor
STRINGXP_008795276.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP108236116
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G59750.40.0auxin response factor 1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]