PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s868571g006
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family GRAS
Protein Properties Length: 202aa    MW: 23217.6 Da    PI: 7.8265
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s868571g006genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS200.41.1e-6147198223374
               GRAS 223 erdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlek 314
                        +++ +L  +++lsPkv+vv+eqe++hn++++ +rf+eal++y+alfd+le+++pr s er+ +E++l+g+ei+n++aceg errerhe+lek
  PDK_30s868571g006  47 KTECFLASLWGLSPKVMVVTEQESNHNAPTLTARFMEALNFYAALFDCLESTVPRMSVERARIEKMLFGEEIKNIIACEGGERRERHEKLEK 138
                        5788**************************************************************************************** PP

               GRAS 315 WrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                        W +r e aGF+ +pls+ a+ qa++ll+ ++ +gy+v ee+g+++++W+drpL+svSaWr
  PDK_30s868571g006 139 WVQRQELAGFRRLPLSYLAMLQARRLLQSYGCEGYKVREEDGCFFFCWHDRPLFSVSAWR 198
                        ***********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098524.8171178IPR005202Transcription factor GRAS
PfamPF035143.9E-5947198IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 202 aa     Download sequence    Send to blast
MAQLHRIVQM NYQGTLGELL EKDHANGRSP SQDSASSSSL ALAPSPKTEC FLASLWGLSP  60
KVMVVTEQES NHNAPTLTAR FMEALNFYAA LFDCLESTVP RMSVERARIE KMLFGEEIKN  120
IIACEGGERR ERHEKLEKWV QRQELAGFRR LPLSYLAMLQ ARRLLQSYGC EGYKVREEDG  180
CFFFCWHDRP LFSVSAWRFG RF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A2e-2358197241378Protein SCARECROW
5b3h_A2e-2358197240377Protein SCARECROW
5b3h_D2e-2358197240377Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008786893.11e-147scarecrow-like protein 3
SwissprotQ9LPR82e-76SCL3_ARATH; Scarecrow-like protein 3
TrEMBLA0A2H3XPR31e-145A0A2H3XPR3_PHODC; scarecrow-like protein 3
STRINGXP_008786893.11e-146(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP60438176
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50420.13e-77scarecrow-like 3
Publications ? help Back to Top
  1. Gong X, et al.
    SEUSS Integrates Gibberellin Signaling with Transcriptional Inputs from the SHR-SCR-SCL3 Module to Regulate Middle Cortex Formation in the Arabidopsis Root.
    Plant Physiol., 2016. 170(3): p. 1675-83
    [PMID:26818732]
  2. Lee SA, et al.
    Interplay between ABA and GA Modulates the Timing of Asymmetric Cell Divisions in the Arabidopsis Root Ground Tissue.
    Mol Plant, 2016. 9(6): p. 870-84
    [PMID:26970019]
  3. Choi JW,Lim J
    Control of Asymmetric Cell Divisions during Root Ground Tissue Maturation.
    Mol. Cells, 2016. 39(7): p. 524-9
    [PMID:27306644]