PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s868711g002
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family bHLH
Protein Properties Length: 630aa    MW: 70443.8 Da    PI: 5.2719
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s868711g002genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH474.5e-15426473355
                        HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                        ++h   ErrRR+++N++f  Lr+l+P++      K++Ka+iL  ++eY+k+Lq
  PDK_30s868711g002 426 ASHVLSERRRREKLNEKFLVLRSLVPSL-----SKVDKASILGDTIEYLKELQ 473
                        589999*********************8.....7******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142157.4E-3626162IPR025610Transcription factor MYC/MYB N-terminal
SuperFamilySSF474597.98E-19423487IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.371423472IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.6E-12426473IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.4E-19427482IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.29E-15427477No hitNo description
SMARTSM003532.6E-17429478IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009957Biological Processepidermal cell fate specification
GO:0010091Biological Processtrichome branching
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 630 aa     Download sequence    Send to blast
MCSYLKIMLH IPKNVLSSIV CALVLRWVLA WSDGYYNGDI KTRKTTQPVE FKADQMGLQR  60
SEQLRELYES LSAGDGNQQS KRPFASLSPE DLTDTEWYYL VCMSFTFRPG QGLPGKALAS  120
NQDIWLSNAQ FADSKIFSRS LLAKTVVCIP FMDGVLELGT TEPDEDILCP NLECEIVDTM  180
ILGEHNLVPD CQAPLESGSP AFPFGSHSYA SDKENELIQD KVEELQASIC EEPKIDSPHD  240
SSNECCPNQQ ANNNSFRIER LNSASQVHNG QLMDDEFSNG LHGSLNSSDC ISQSFVNPQR  300
VLSSPMGERI KNNVLDSLQE EDFTKLISLD LQGEKSHYTK TIAAILRNSK QLESITCFPC  360
GSHESSFVVW KRSLNTPKPL SAISQKLVKK ILVDTVWMHG GLPLKPQEEN GLRNKVWKLE  420
GDDANASHVL SERRRREKLN EKFLVLRSLV PSLSKVDKAS ILGDTIEYLK ELQRKVEELD  480
SRGELGEFEA RGTRKHPDIS ERTSDNYGNK EIANGRKPSA TKRKACDIEE AEVEHHLFLS  540
KDGPLDVNVT VIEKEVLIEM HCPWRECLLL EIVDAASSLH LDPFSVQSST VDDNLAVTIK  600
AKFRGSVVAS PGMIKRALQR VVVTTLYSSP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4rqw_A2e-122816246176Transcription factor MYC3
4rqw_B2e-122816246176Transcription factor MYC3
4rru_A2e-122816285215Transcription factor MYC3
4rs9_A2e-122816246176Transcription factor MYC3
4ywc_A2e-122816285215Transcription factor MYC3
4ywc_B2e-122816285215Transcription factor MYC3
4yz6_A2e-122816246176Transcription factor MYC3
5gnj_A5e-13421481262Transcription factor MYC2
5gnj_B5e-13421481262Transcription factor MYC2
5gnj_E5e-13421481262Transcription factor MYC2
5gnj_F5e-13421481262Transcription factor MYC2
5gnj_G5e-13421481262Transcription factor MYC2
5gnj_I5e-13421481262Transcription factor MYC2
5gnj_M5e-13421481262Transcription factor MYC2
5gnj_N5e-13421481262Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1431436ERRRRE
2432437RRRREK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008806796.10.0transcription factor GLABRA 3
TrEMBLA0A2H3ZYP60.0A0A2H3ZYP6_PHODC; transcription factor GLABRA 3
STRINGXP_008806796.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP93233109
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41315.11e-134bHLH family protein