PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PDK_30s868931g002

Organism

Phoenix dactylifera

Taxonomic ID

42345

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix

Family

NF-YA

Protein Properties

Length: 152aa MW: 16181.9 Da PI: 8.3295

Description

NF-YA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PDK_30s868931g002	genome	PDK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CBFB_NFYA	41.4	4.6e-13	16	37	37	58
CBFB_NFYA 37 pylheSRhkhAlrRpRgsgGrF 58 pylheSRh hA+rR+Rg+gGrF PDK_30s868931g002 16 PYLHESRHLHAMRRARGCGGRF 37 9********************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51152	18.091	1	40	IPR001289	Nuclear transcription factor Y subunit A
Pfam	PF02045	2.9E-10	16	37	IPR001289	Nuclear transcription factor Y subunit A

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 152 aa Download sequence Send to blast
FMVIDNYDYT STILLPYLHE SRHLHAMRRA RGCGGRFLNT KKAEASASIA NPENGGNAGA 60 SLPTQSASSS ASQVLPSGCP GSNTNEIKRP VVQGICEAQA YANGNDGYQQ QSGFQLSFHS 120 KSGERVEEGD CSGQQRGGIL VNRPPNRAVA IQ

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008790783.1	2e-94	nuclear transcription factor Y subunit A-1
Refseq	XP_008790792.1	2e-94	nuclear transcription factor Y subunit A-1
Refseq	XP_026660955.1	2e-94	nuclear transcription factor Y subunit A-1
TrEMBL	A0A2H3XYY8	5e-93	A0A2H3XYY8_PHODC; nuclear transcription factor Y subunit A-1
STRING	XP_008790783.1	8e-94	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP27498	4	5

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G30500.2	4e-13	nuclear factor Y, subunit A7