PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s868971g001
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family WRKY
Protein Properties Length: 75aa    MW: 8106.1 Da    PI: 11.0209
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s868971g001genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY30.76.2e-105675221
                       --SS-EEEEEEE--TT-SS- CS
               WRKY  2 dDgynWrKYGqKevkgsefp 21
                       +D ++WrKYGqK++kgs++p
  PDK_30s868971g001 56 SDSWAWRKYGQKPIKGSPYP 75
                       69****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.803.8E-94475IPR003657WRKY domain
SuperFamilySSF1182901.7E-75275IPR003657WRKY domain
PROSITE profilePS5081112.1515675IPR003657WRKY domain
PfamPF031061.5E-55775IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 75 aa     Download sequence    Send to blast
MDGCSNGTDP KDRGIATTDL KTSTRLSSPS SKKRSRRSVQ KRVVSVPSGD GAVPPSDSWA  60
WRKYGQKPIK GSPYP
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008802713.12e-32probable WRKY transcription factor 65
SwissprotQ9LP561e-15WRK65_ARATH; Probable WRKY transcription factor 65
TrEMBLA0A2H3YRF84e-31A0A2H3YRF8_PHODC; probable WRKY transcription factor 65
STRINGXP_008802713.17e-32(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP4077323
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G29280.15e-11WRKY DNA-binding protein 65
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Singh V,Roy S,Singh D,Nandi AK
    Arabidopsis flowering locus D influences systemic-acquired-resistance- induced expression and histone modifications of WRKY genes.
    J. Biosci., 2014. 39(1): p. 119-26
    [PMID:24499796]