PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s872181g001
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family MYB_related
Protein Properties Length: 286aa    MW: 31465.7 Da    PI: 6.5023
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s872181g001genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding58.71.3e-185799145
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
    Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45
                       +++W++eEd++l++a+ + G++ W+ Ia++++ gRt++++k++w+
  PDK_30s872181g001 57 KDSWSEEEDKILIQAHSEVGNK-WAEIAKRLP-GRTENSIKNHWN 99
                       679*******************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466893.59E-1749108IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.604.5E-2154104IPR009057Homeodomain-like
PROSITE profilePS5129422.90455106IPR017930Myb domain
SMARTSM007174.6E-1856104IPR001005SANT/Myb domain
PfamPF002491.9E-175799IPR001005SANT/Myb domain
CDDcd001673.90E-1559102No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 286 aa     Download sequence    Send to blast
MVHAARLLAC VVWPPCHVYK FEINAEPCYG KGSLQGQPAT NTSNNHSVKL VPLQIKKDSW  60
SEEEDKILIQ AHSEVGNKWA EIAKRLPGRT ENSIKNHWNA TKRRQFSRRR CRNSKYPKSG  120
SLLQNYIKNL ALQWGTAPTV PAASAAAPRT PADDHLKSTE SNDGGSEASM ALTCVPVEGL  180
SADVGADACG GSDDILACDF SDMANLLLDD NKVDVPPERY DMGYLFDLLG WGPGIAKKSC  240
LDMEMAWDEM PTPCEANTKV KVKKEMDLVE MIAQNNKADC SSRNQL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1idy_A1e-2053106154MOUSE C-MYB DNA-BINDING DOMAIN REPEAT 3
1idz_A1e-2053106154MOUSE C-MYB DNA-BINDING DOMAIN REPEAT 3
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008812703.11e-168transcription factor MYB13-like
TrEMBLA0A2H3ZFG61e-167A0A2H3ZFG6_PHODC; transcription factor MYB13-like
STRINGXP_008812703.11e-167(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP28063788
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18770.14e-27myb domain protein 98