PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s873251g004
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family MYB_related
Protein Properties Length: 78aa    MW: 9049.12 Da    PI: 8.9229
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s873251g004genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding32.52e-101559345
                       SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHH CS
    Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwq 45
                       +WT  E +++ +a +++ ++   +W+++a+ +g g++  +++ ++ 
  PDK_30s873251g004 15 SWTLRENKKFEEALAKYDKEtpdRWHKVAQAVG-GKSVDEVRRHYE 59
                       7******************9*************.**********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.54E-131066IPR009057Homeodomain-like
PROSITE profilePS5129311.7161166IPR017884SANT domain
SMARTSM007173.1E-91264IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.4E-51363IPR009057Homeodomain-like
CDDcd001674.68E-71562No hitNo description
PfamPF002497.0E-91559IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 78 aa     Download sequence    Send to blast
MASSSMSLSR TSDSSWTLRE NKKFEEALAK YDKETPDRWH KVAQAVGGKS VDEVRRHYEL  60
LIRDINYIET GRVSIPNY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A1e-26678173RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008800711.15e-52protein RADIALIS-like 3
SwissprotQ1A1732e-30RADL6_ARATH; Protein RADIALIS-like 6
TrEMBLA0A2H3YLV71e-50A0A2H3YLV7_PHODC; protein RADIALIS-like 3
STRINGXP_008800711.12e-51(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP27038230
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75250.25e-30RAD-like 6