PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s873251g005
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family MYB_related
Protein Properties Length: 214aa    MW: 24410.4 Da    PI: 10.8079
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s873251g005genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding28.63.3e-09854246
                       SSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHH CS
    Myb_DNA-binding  2 grWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqk 46
                        +WT+   + +  a +++ ++   +W+ +ar +g g++++++k ++  
  PDK_30s873251g005  8 SPWTPKQNKMFETALAKYDKDtpdRWHDVARAVG-GKSAEEVKRHYER 54
                       58********************************.**********975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129310.493560IPR017884SANT domain
SMARTSM007171.7E-8658IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.8E-4856IPR009057Homeodomain-like
SuperFamilySSF466892.24E-12864IPR009057Homeodomain-like
PfamPF002496.3E-7954IPR001005SANT/Myb domain
CDDcd001671.69E-7956No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 214 aa     Download sequence    Send to blast
MASTSLSSPW TPKQNKMFET ALAKYDKDTP DRWHDVARAV GGKSAEEVKR HYERLVEDIR  60
QIESGHVPFP SYRSSGGRGR WIPRPPWIPS SSKRIKPMVI AMRKIINISL KTVKVKTNSC  120
HVSNQKLTQL RSMIGIFPKP IPPCTTPKIS KLPFHHTQSP FNAKSHTISW HTFSLGMLMT  180
VHFHMILVYD KLISEVKDLS VFIKKSSYQG TSEN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A2e-31177178RADIALIS
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP27038230
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75250.11e-33RAD-like 6