PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PDK_30s873441g002

Organism

Phoenix dactylifera

Taxonomic ID

42345

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix

Family

WOX

Protein Properties

Length: 285aa MW: 32534.1 Da PI: 6.3585

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PDK_30s873441g002	genome	PDK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	51.4	1.8e-16	154	215	1	57
TT--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 1 rrkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 r++R++ t++q+ +L + +++ + p++ee++ ++++l ++t ++V++WFqNr+++ek+ PDK_30s873441g002 154 RKQRWSATPTQTLILDKIYHSgKVSPNKEEIKWITSELsqhgEITVSNVYNWFQNRKTREKR 215 89****************99*************************************7 PP
2	Wus_type_Homeobox	83.2	3e-27	154	217	2	65
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 ++RW+ tp+Q iL+++y+sG ++Pnkeei+ it+eL+++G+i+ NV++WFQNrk+Re++k+ PDK_30s873441g002 154 RKQRWSATPTQTLILDKIYHSGKVSPNKEEIKWITSELSQHGEITVSNVYNWFQNRKTREKRKR 217 589***********************************************************95 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	1.28E-14	148	216	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	9.4E-12	148	220	IPR009057	Homeodomain-like
PROSITE profile	PS50071	12.6	151	216	IPR001356	Homeobox domain
SMART	SM00389	9.9E-10	153	220	IPR001356	Homeobox domain
CDD	cd00086	1.48E-7	154	217	No hit	No description
Pfam	PF00046	3.0E-14	154	215	IPR001356	Homeobox domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 285 aa Download sequence Send to blast
MDWDLMEWMM EWKRSHAVEN ATADNCLTSA TPSNYDNVPN KVCSTGGKVG QGLVEEHQIV 60 KSADGSQELK EEGEETTGKV GRGPVEEHQI VKVMTDEQEE ALRRQISASR AIRESLLESY 120 RRIASEYLSQ HGTRIGNPST DPLKSTEGCK RSNRKQRWSA TPTQTLILDK IYHSGKVSPN 180 KEEIKWITSE LSQHGEITVS NVYNWFQNRK TREKRKRVDE LVHKIKSEVE PGAESSNGKK 240 IQLEKIDFDN KQYLSTDAHF FQTSQVNSEM HFINQESDIA HESIN

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008809129.1	0.0	WUSCHEL-related homeobox 8
TrEMBL	A0A2H3Z6H4	0.0	A0A2H3Z6H4_PHODC; WUSCHEL-related homeobox 8
STRING	XP_008809129.1	0.0	(Phoenix dactylifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35550.1	2e-33	WUSCHEL related homeobox 13