PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PDK_30s873591g002

Organism

Phoenix dactylifera

Taxonomic ID

42345

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix

Family

ZF-HD

Protein Properties

Length: 208aa MW: 22373.2 Da PI: 8.5033

Description

ZF-HD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PDK_30s873591g002	genome	PDK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	ZF-HD_dimer	105.9	2.4e-33	72	128	3	60
ZF-HD_dimer 3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreveee 60 vrY+eClkNhAas+Gg a+DGCgEfmps geegt +alkC+AC+CHRnFHR+eve e PDK_30s873591g002 72 VVRYRECLKNHAASIGGSATDGCGEFMPS-GEEGTLEALKCSACNCHRNFHRKEVEGE 128 589***********************9.999*******************9875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04770	1.6E-30	73	125	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDom	PD125774	2.0E-23	73	128	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMs	TIGR01566	4.7E-31	74	125	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profile	PS51523	27.172	75	124	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain

Sequence ? help Back to Top
Protein Sequence Length: 208 aa Download sequence Send to blast
MDLSGHEGEI PIPISSTYVG GHGQSHGHSI IHDAPPLHHH PPNGPPPPLS AATSEEQQRH 60 PGNPYSTKKG VVVRYRECLK NHAASIGGSA TDGCGEFMPS GEEGTLEALK CSACNCHRNF 120 HRKEVEGESS SCDCFHYLKG RKAFGYGPAG NSLIPRPSPH HMIMPLGALQ TSESDEMEGV 180 GGGAMVRPPM AKKRFRTKRT QKKVKLNA

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008808961.1	1e-125	zinc-finger homeodomain protein 4-like
TrEMBL	A0A2H3Z6U7	1e-123	A0A2H3Z6U7_PHODC; zinc-finger homeodomain protein 4-like
STRING	XP_008808961.1	1e-124	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP815	35	145

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G02540.1	1e-35	homeobox protein 21