PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PDK_30s873681g006

Organism

Phoenix dactylifera

Taxonomic ID

42345

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix

Family

NAC

Protein Properties

Length: 278aa MW: 30969.6 Da PI: 6.2913

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PDK_30s873681g006	genome	PDK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	78	2.1e-24	2	118	12	128
NAM 12 eelvveyLkkkvegkkleleevikevdiykvePwdLpkkvka.eekewyfFskrdkkyat.gkrknratksgyWkatgkdkevlsk.kgelv 100 eel+ eyLk+k +gk+l++ ++ikev++y+++P L+k++ + + k+ yfF+k dk++++ ++r +r+ + g W + dk+vl+ ++ + PDK_30s873681g006 2 EELI-EYLKEKDSGKPLPT-NIIKEVELYNHQPAVLHKRFPNtRIKSRYFFTKLDKRSKNkKHRDRRVKNGGHWICSAGDKPVLTDgGQYTG 91 7999.9***********.89**********965444166688*99998873667788999**********98444558 PP NAM 101 glkktLvfykgrapkgektdWvmheyrl 128 g+ ktL++y+g+ ++ +kt W+m+eyrl PDK_30s873681g006 92 GVYKTLTYYEGNGRS-KKTGWIMKEYRL 118 99***999887.8*******98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	29.787	1	143	IPR003441	NAC domain
Pfam	PF02365	3.4E-11	2	118	IPR003441	NAC domain
SuperFamily	SSF101941	2.35E-26	3	143	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 278 aa Download sequence Send to blast
MEELIEYLKE KDSGKPLPTN IIKEVELYNH QPAVLHKRFP NTRIKSRYFF TKLDKRSKNK 60 KHRDRRVKNG GHWICSAGDK PVLTDGGQYT GGVYKTLTYY EGNGRSKKTG WIMKEYRLSE 120 ESKQHQPTAN QGSDWVLCEI HHKGNTAEDD EASDDSSEED NEAEQEEPGN AAGLLPDFTH 180 LQHDTVTDIP GFSRVAALLS SGGTGVDRSL LPFGDSHIAP GTGIEDSPPE QPPAPFSCDW 240 ITKNPEELEK MILLVAASIA SEHTKGLIIC SQGIKNKK

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	3e-19	2	148	29	170	NO APICAL MERISTEM PROTEIN
1ut4_B	3e-19	2	148	29	170	NO APICAL MERISTEM PROTEIN
1ut7_A	3e-19	2	148	29	170	NO APICAL MERISTEM PROTEIN
1ut7_B	3e-19	2	148	29	170	NO APICAL MERISTEM PROTEIN
3swm_A	3e-19	2	148	32	173	NAC domain-containing protein 19
3swm_B	3e-19	2	148	32	173	NAC domain-containing protein 19
3swm_C	3e-19	2	148	32	173	NAC domain-containing protein 19
3swm_D	3e-19	2	148	32	173	NAC domain-containing protein 19
3swp_A	3e-19	2	148	32	173	NAC domain-containing protein 19
3swp_B	3e-19	2	148	32	173	NAC domain-containing protein 19
3swp_C	3e-19	2	148	32	173	NAC domain-containing protein 19
3swp_D	3e-19	2	148	32	173	NAC domain-containing protein 19
4dul_A	3e-19	2	148	29	170	NAC domain-containing protein 19
4dul_B	3e-19	2	148	29	170	NAC domain-containing protein 19

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	52	60	LDKRSKNKK
2	54	60	KRSKNKK

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008780245.2	1e-178	NAC domain-containing protein 83-like
TrEMBL	A0A2H3X9A1	1e-176	A0A2H3X9A1_PHODC; NAC domain-containing protein 83-like
STRING	XP_008780245.1	1e-177	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP29426	2	3

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G15510.1	3e-21	NAC domain containing protein 2