PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s874371g002
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family NAC
Protein Properties Length: 341aa    MW: 38793.7 Da    PI: 8.3142
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s874371g002genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM169.51.1e-5281351128
                NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 
                        lppGfrFhPtdeel+ +yL++++++ ++++ ++i+evdiyk++Pw+Lp+k+  +++ewyfFs+rd+ky++g r+nra++sgyWkatg+dk++
  PDK_30s874371g002   8 LPPGFRFHPTDEELILHYLRNRAASFPCPV-SIIAEVDIYKFDPWNLPAKALFGDREWYFFSPRDRKYPNGIRPNRAAASGYWKATGTDKPI 98 
                        79****************************.89***************888889************************************** PP

                NAM  93 lsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                        +s+ +++++g+kk Lvfy+gr pkg ktdW+mheyrl
  PDK_30s874371g002  99 ISSkENKNIGVKKALVFYQGRPPKGLKTDWIMHEYRL 135
                        99867788***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.79E-654167IPR003441NAC domain
PROSITE profilePS5100561.7998167IPR003441NAC domain
PfamPF023655.9E-279135IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 341 aa     Download sequence    Send to blast
MSNPATSLPP GFRFHPTDEE LILHYLRNRA ASFPCPVSII AEVDIYKFDP WNLPAKALFG  60
DREWYFFSPR DRKYPNGIRP NRAAASGYWK ATGTDKPIIS SKENKNIGVK KALVFYQGRP  120
PKGLKTDWIM HEYRLAEAQN NNIYRPMKLR DSSMRLDDWV LCRIYKKSNH TLSMDPEQGE  180
IAVEDVFMPG LTNTTPQNNP PSLPKSCSLT ELFDNVDFSA LSQLLENTPD MPSFQQDPVV  240
HPSSNQPFIN NGSSSNSSNV FIQQLSQTES PVMPAENALK RHRTVDSCLE HSSQLSRPSK  300
RLIDSSIFTN FTSQFDSPQY NLIGHHFSNQ QLLLNSNLNL R
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A8e-74716916167NO APICAL MERISTEM PROTEIN
1ut4_B8e-74716916167NO APICAL MERISTEM PROTEIN
1ut7_A8e-74716916167NO APICAL MERISTEM PROTEIN
1ut7_B8e-74716916167NO APICAL MERISTEM PROTEIN
3swm_A9e-74216912170NAC domain-containing protein 19
3swm_B9e-74216912170NAC domain-containing protein 19
3swm_C9e-74216912170NAC domain-containing protein 19
3swm_D9e-74216912170NAC domain-containing protein 19
3swp_A9e-74216912170NAC domain-containing protein 19
3swp_B9e-74216912170NAC domain-containing protein 19
3swp_C9e-74216912170NAC domain-containing protein 19
3swp_D9e-74216912170NAC domain-containing protein 19
4dul_A8e-74716916167NAC domain-containing protein 19
4dul_B8e-74716916167NAC domain-containing protein 19
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008792524.10.0NAC transcription factor 29-like
TrEMBLA0A2H3Y3790.0A0A2H3Y379_PHODC; NAC transcription factor 29-like
STRINGXP_008792524.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP38033775
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04070.12e-91NAC domain containing protein 47