PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s877681g002
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family WRKY
Protein Properties Length: 640aa    MW: 69154.1 Da    PI: 8.2345
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s877681g002genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY962.6e-30318377159
                        ---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
               WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                        ++Dg++WrKYGqK  kg+++pr+YYrCt a  Cpv+k+v+r+aed +++++tYeg+Hnh+
  PDK_30s877681g002 318 MNDGCQWRKYGQKIAKGNPCPRAYYRCTVApACPVRKQVQRCAEDMSILITTYEGNHNHP 377
                        58***************************99****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512575115No hitNo description
Gene3DG3DSA:2.20.25.807.5E-32304379IPR003657WRKY domain
SuperFamilySSF1182905.49E-27311379IPR003657WRKY domain
PROSITE profilePS5081128.575313379IPR003657WRKY domain
SMARTSM007741.5E-36318378IPR003657WRKY domain
PfamPF031061.4E-26319377IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 640 aa     Download sequence    Send to blast
MEQRPWILNH GVIACIKRLL YIRGGLQRQK AKKGGTFIKK EGRRGDLGLS SMEVILKRNV  60
VVKEERKVGC VGDEENGEIG KFGGETSTCG RHSSRSSSPS QRDSIDNREV PTVIGSERSF  120
MDASSRPSSS KPKNSVTISQ EKQLESTKAE RCEVRKENER LKAFLAQTMK DSQSPQMHFF  180
DIVQTYHVKK PDETFSTPDD AEEPELVSLS LGTISSRNRK EEEANIYSKG KENEMINEGL  240
ALGLHCKLDG SSSGPGEALL NSIPDDRFEE PKEADAGEPW LPSKTVTSSA NAEDEVFPQP  300
PLKRSRVSVR ARCDTPTMND GCQWRKYGQK IAKGNPCPRA YYRCTVAPAC PVRKQVQRCA  360
EDMSILITTY EGNHNHPLPM SATAMASTTS AAASMLISGS STSCPAFGSV ASSSANLHGF  420
SLAANSRLKQ FYPPNPSMYS SSSHPTITLD LTAPSSTPQY KSSSNFTYSK YPSTSLNFSS  480
SEFNTMPASW GNGNLSYGAQ LYDKNCMGSL NLGRQTEDSF INPSYMHKGT SQSPSGQHFL  540
TETVAKAITS DPSFQSALAA AVTSYLGAQG GQGAGEGGSG QVGLKWGEQA AMAPAYTSAF  600
ASPTYSSHQQ GSVTFLQPPS ALLSSKSASA SPVDNREQIS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A2e-213183791777Probable WRKY transcription factor 4
2lex_A2e-213183791777Probable WRKY transcription factor 4
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008813530.20.0probable WRKY transcription factor 72
TrEMBLA0A2H3ZHB40.0A0A2H3ZHB4_PHODC; probable WRKY transcription factor 72
STRINGXP_008813530.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP50473862
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15130.11e-75WRKY DNA-binding protein 72