PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PDK_30s878091g001

Organism

Phoenix dactylifera

Taxonomic ID

42345

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix

Family

bZIP

Protein Properties

Length: 598aa MW: 65087.4 Da PI: 9.2113

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PDK_30s878091g001	genome	PDK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	39.1	1.6e-12	150	210	2	62
XXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 2 kelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklkse 62 +e kr r+++NRe+A+ sR+RKk ++eeLeekvk++ + +L +++ + e a+l+++ PDK_30s878091g001 150 EEEKRKARLMRNRESAQLSRLRKKHYVEELEEKVKSMHSTINELNTKISYIVAENASLRQQ 210 5789**********************************99*****999999999987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	1.1E-14	149	213	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	1.8E-10	150	211	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	10.599	151	214	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	1.13E-11	153	211	No hit	No description
Gene3D	G3DSA:1.20.5.170	1.1E-15	153	212	No hit	No description
CDD	cd14704	1.47E-19	154	205	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0042538	Biological Process	hyperosmotic salinity response
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0005783	Cellular Component	endoplasmic reticulum
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 598 aa Download sequence Send to blast
MHPSTAPFFD LDLSFDDLPL AADFDADFPF PDFDISTDFP IEDLLRSPED QSFPPSVDGS 60 PAHNSNDGSD IFSSHPHESS DLGPSSPDSG NCSRVDSQEV KLEEGKSGWT PKRKKDREDG 120 CVNSNPRSSK HRRSEEGNSA SVFNAGSEGE EEKRKARLMR NRESAQLSRL RKKHYVEELE 180 EKVKSMHSTI NELNTKISYI VAENASLRQQ LGSQVPLVPI PKLKPQQPAS APRAKKSESK 240 KNESKIKKVA SVSLLGLLLV MLFSGSVVPG VNLGNGGRRD EVSGGLAVVK GGIFGRSKGR 300 ILSVSGRGSG LNSTDEIGLC DGKMGFGEGG VERRTVKLNP SETLPALLYV PRNGKHVKIN 360 GNLIIHSVLA SEKAMAQTKS IDQVRQSSTK EALPKSGREV DRRSNYYRGS AEHQRALASD 420 SEDVFGDNSK SIPVDGPLQQ WFREGMTGPN LSSGMCTEVF QFDTPGGIIP ATKIVNTSVA 480 NATGKLPPSA HPRKMKNRRI MYPEPIPLTG TTLNGTKHFR GHSESSNFHD KKSVTSMVVS 540 VLADPREAGD GDGEAKMSPK SLSRFFVVVL LDSVKYVTYS CVPPLKTMLF MMIHLSIS

Sequence ? help Back to Top

Protein Sequence Length: 598 aa Download sequence Send to blast

MHPSTAPFFD LDLSFDDLPL AADFDADFPF PDFDISTDFP IEDLLRSPED QSFPPSVDGS  60
PAHNSNDGSD IFSSHPHESS DLGPSSPDSG NCSRVDSQEV KLEEGKSGWT PKRKKDREDG  120
CVNSNPRSSK HRRSEEGNSA SVFNAGSEGE EEKRKARLMR NRESAQLSRL RKKHYVEELE  180
EKVKSMHSTI NELNTKISYI VAENASLRQQ LGSQVPLVPI PKLKPQQPAS APRAKKSESK  240
KNESKIKKVA SVSLLGLLLV MLFSGSVVPG VNLGNGGRRD EVSGGLAVVK GGIFGRSKGR  300
ILSVSGRGSG LNSTDEIGLC DGKMGFGEGG VERRTVKLNP SETLPALLYV PRNGKHVKIN  360
GNLIIHSVLA SEKAMAQTKS IDQVRQSSTK EALPKSGREV DRRSNYYRGS AEHQRALASD  420
SEDVFGDNSK SIPVDGPLQQ WFREGMTGPN LSSGMCTEVF QFDTPGGIIP ATKIVNTSVA  480
NATGKLPPSA HPRKMKNRRI MYPEPIPLTG TTLNGTKHFR GHSESSNFHD KKSVTSMVVS  540
VLADPREAGD GDGEAKMSPK SLSRFFVVVL LDSVKYVTYS CVPPLKTMLF MMIHLSIS

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor involved in endoplasmic reticulum (ER) stress response. Acts as ER stress sensor and activates the transcription factor BZIP50 and the chaperone BIP1. {ECO:0000269\|PubMed:22050533, ECO:0000269\|PubMed:22084314}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by dithiothreitol- and tunicamycin-induced endoplasmic reticulum (ER) stress response. {ECO:0000269\|PubMed:22084314}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008808577.1	0.0	bZIP transcription factor 39-like
Swissprot	Q6AU90	1e-127	BZP39_ORYSJ; bZIP transcription factor 39
TrEMBL	A0A2H3Z5Y8	0.0	A0A2H3Z5Y8_PHODC; bZIP transcription factor 39-like
STRING	XP_008808577.1	0.0	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP8228	35	45

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G40950.1	1e-109	bZIP family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Cheng CH, et al. A fine physical map of the rice chromosome 5. Mol. Genet. Genomics, 2005. 274(4): p. 337-45 [PMID:16261349] Takahashi H,Kawakatsu T,Wakasa Y,Hayashi S,Takaiwa F A rice transmembrane bZIP transcription factor, OsbZIP39, regulates the endoplasmic reticulum stress response. Plant Cell Physiol., 2012. 53(1): p. 144-53 [PMID:22084314] Ohta M, et al. Analysis of rice ER-resident J-proteins reveals diversity and functional differentiation of the ER-resident Hsp70 system in plants. J. Exp. Bot., 2013. 64(18): p. 5429-41 [PMID:24153418] Cheng Q, et al. An alternatively spliced heat shock transcription factor, OsHSFA2dI, functions in the heat stress-induced unfolded protein response in rice. Plant Biol (Stuttg), 2015. 17(2): p. 419-29 [PMID:25255693]