PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s879231g001
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family M-type_MADS
Protein Properties Length: 143aa    MW: 16545.4 Da    PI: 10.471
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s879231g001genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF55.47.5e-181152344
                       --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTS CS
             SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstg 44
                       i n+s r  t+ kRr+g+ KK +ELS+LCd++++++++s++ 
  PDK_30s879231g001 11 IANDSHRRATLKKRRKGLVKKVSELSTLCDVKACLVVYSPHE 52
                       89*************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004322.9E-22160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006617.381149IPR002100Transcription factor, MADS-box
CDDcd002661.23E-30285No hitNo description
SuperFamilySSF554553.66E-24395IPR002100Transcription factor, MADS-box
PRINTSPR004041.2E-10323IPR002100Transcription factor, MADS-box
PfamPF003191.8E-171151IPR002100Transcription factor, MADS-box
PRINTSPR004041.2E-102338IPR002100Transcription factor, MADS-box
PRINTSPR004041.2E-103859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 143 aa     Download sequence    Send to blast
MARKKVNLAW IANDSHRRAT LKKRRKGLVK KVSELSTLCD VKACLVVYSP HEPLPVMWPS  60
VPEATQVVAR FRSMPEMEQS KKMMDQEGFL LQRVTKLQDQ LRRQERENRE LETTMLMYEG  120
LAGRSLHNAG MQDVTSLAWM GLF
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1224RKKVNLAWIANDSHRRATLKKRR
22125KKRRK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. Controls central cell differentiation during female gametophyte development. Required for the expression of DEMETER and DD46, but not for the expression of FIS2 (PubMed:16798889). Probable transcription factor that may function in the maintenance of the proper function of the central cell in pollen tube attraction (Probable). {ECO:0000269|PubMed:16798889, ECO:0000305|PubMed:26462908}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008812317.19e-99agamous-like MADS-box protein AGL80
SwissprotQ9FJK32e-39AGL80_ARATH; Agamous-like MADS-box protein AGL80
TrEMBLA0A2H3ZEJ42e-97A0A2H3ZEJ4_PHODC; agamous-like MADS-box protein AGL80
STRINGXP_008812317.13e-98(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP36336202
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48670.14e-32AGAMOUS-like 80
Publications ? help Back to Top
  1. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]